cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK120310     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0616000 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 26,041,855 -  26,049,689  ( + ) ;   7,835(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,041,855 -  26,042,243 ( + ) ;   389 (bp)
Exon 2 Location 26,042,326 -  26,042,505 ( + ) ;   180 (bp)
Exon 3 Location 26,042,609 -  26,042,711 ( + ) ;   103 (bp)
Exon 4 Location 26,042,832 -  26,042,856 ( + ) ;   25 (bp)
Exon 5 Location 26,043,324 -  26,043,351 ( + ) ;   28 (bp)
Exon 6 Location 26,044,340 -  26,044,492 ( + ) ;   153 (bp)
Exon 7 Location 26,045,076 -  26,047,158 ( + ) ;   2,083 (bp)
Exon 8 Location 26,047,403 -  26,048,720 ( + ) ;   1,318 (bp)
Exon 9 Location 26,048,993 -  26,049,076 ( + ) ;   84 (bp)
Exon 10 Location 26,049,218 -  26,049,689 ( + ) ;   472 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os07g0616000 Os07t0616000-01 J013055F14 215029 J013055F14 19065 LOC_Os07g42410.1 AK120310 10791 AP008213.2 255677434 BAF22187.1 113611809 NC_008400.2 297607852 NM_001066808.1 115473348 NP_001060273.1 115473349


Chromosome: 7 ,  position: 26,041,855 - 26,049,689 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aatttttctc actgtcacag agcaccactg cagcaccaac aaaccaagca gctcatcttc 
000061 cagtcttcca ctcttcctct ctctctagct cactctctct ctttctctct cctcgcgcga 
000121 gcgcacgctt accggaatcg ggggggcgag cggcggcgag atccgggcgg gccgcggcga 
000181 tctcgtcgcc gcgggagctg cattggcgcc ggctcgccgc cttcccggcg tttcttgggg 
000241 ctgtcgcgaa ggaggaggag gaggaggaga gcttggggtt cttggtgagg ggatccacca 
000301 gatccgacct cgccggcggc ggcggccgcg atggagcccg acgccccgct cgacttcgcg 
000361 ctcttccagc tctccccgcg ccgctcgcgg tgaggatttc gattgggggg gggggggggg 
000421 gtggtgttcg tcctgtgggt gtttgctaat ggtgggatgc ctccgctgca ggtgcgagct 
000481 ggtggtgtcc gggaatgggc ggacggagag gatcgcgtcc gggtcggtga agccgttcgt 
000541 ggcgcacctg cgcgcggcgg aggagcaggc ggcggcgcag ccgccgccgc cggccatccg 
000601 gctgcagctg gaccgccgcg ccgcgtggtt cagcaagggc accctcgaga ggtccgtttg 
000661 ctgccgtggc agttattggg ttggttggtg gtgtggagaa ttcggggaga aaaagaaatg 
000721 atgggaattc tgagaggtgt tcttgtggtt gaaggttcgt gcggttcgtg agcacgccgg 
000781 aggtgctgga gatggctaac accttcgacg cggagatgtc gcagctggaa ggggctagga 
000841 agatttatgc acagggagtg agtggccaaa gttttctttt ctatattttc tttcagttgt 
000901 ggagtgtgtt taggttgtgt ggtttatggt ggaatgatct tgcagttgtt ctaaaaatag 
000961 tattatgctg tacgcaggtt gccggaggcg ctgatggagc tggtatgcat gacaatgttt 
001021 atagtgttct tttgtttgtc gaatggggtt ttgagtctcg ttcgattagt tttatgcctg 
001081 tttttgttca tagttcatat gtcactcagt ttatctacac ttgaattgag tcgaatcgcg 
001141 actcgagtgc cttcacaagt tatttgtggg aacatccagg gagaactttt attattgatt 
001201 ggcttgatta ctgagatgat gcattcaatg ccactgtcca tattattcat gctgtgaagc 
001261 tttgttaatg ggggaataca gtaaataatc catttccaat tttagaaaga aatgaacaac 
001321 ttaattaatt gttgcatgtg ttgaactgca atattagggt acatgtttta tcgttttaac 
001381 atgccttcat tgaggcaaca tattgttctt ctcaacacaa tttgcttacc atcttacaaa 
001441 tttttttttc ccgggtgaaa atgttgcaga atcagcagca gctgcagata ttacgaagta 
001501 tgcttctatg ccatctctgt cattatctat ttacttcttc attgtccgat aaccttgatt 
001561 taagtgagtt gaacatggtt aacccttact tcttcaggga gaaccttgat tgttatcaat 
001621 ttcagtcaat gatatatgat ttgttaggac tgttctatat ataagaaatg gttggttaag 
001681 aactattcat gacatcgtac taaatacgga gtggagatgc ctgtgtcaga atactttaac 
001741 atgactagta tttcgggcgt tccttgatga actgtttaat gcttattctg tctcaggggc 
001801 ctttcatgat cattttccct tttcggttgc ttggggtgta gcaaactgtg ttcatccttt 
001861 catctgttta ctatgcttaa ggacatcttt tgtttcggct tacaacatta taaaaacttg 
001921 atgttcttaa ttgaatatta gtaaaattgt tgcagtcatg tagcaatgtg atctgctgca 
001981 aattttggta gacaaactca tcgcttgaat atgtagattg tagaatacta tgataattag 
002041 ataaaggtga aatgcttgat ctcttttggt tatgtgggtc agtgctgtta agagccctag 
002101 ttatatagct ttacacaaat gagcacttac atccacgcat gcaccaaaac cttattttat 
002161 tatcgttgtg tatttctaca tcattaattc agtctcttgc ttatgcttta ctaattaaag 
002221 ttgttgctaa agcatcgcta tcagtagtat aggacttaca cataatagct ggtagaatat 
002281 aaatgattat actgtttcat ctgtactcag tcttaaagtt ataattcctt acaaatggca 
002341 ctgtgtaaat catacaaaat atagttgtct gtactacttc atcacgtata acttgaaact 
002401 tactgtaatt tgcatataaa gttagccatt tttgtattgt cagtatccaa agttgatgcc 
002461 ctggcctttt tttttttcta tgcaggaagg aacttcttag agcgattgat gttcgtctaa 
002521 gtgctcttaa acaagacctt gtcacggctt gtgcccgggc atcatctgca gggttcaacc 
002581 ctgacagtgt ttctgagctt gttctttttg cagatcattt tggtgccaac cggctgaggt 
002641 atgattggaa cttaacaagt tcataattta ggttctaggt gtcatcattt atatttactt 
002701 aaagaataca tttcacagaa cttcagacac tttaatagaa aagccacata aaactataga 
002761 tttagaacta aataactcac aaaactactg gtatctgtag agagaaagat tatcattaac 
002821 ttttacaaat gccattatat tgcgcactaa attgtaccta gctcacctca aacttgtaca 
002881 gtatgatgga aagctatgaa catacaaact tcagaattgc agtttaggac acacataaac 
002941 ttcaaacacc ctaaggttat tatggaaaag tggtaaagtt tgcatgagaa gattcttcaa 
003001 tgtactagga gggagatcat ttgaagtgga atcttatatc agattcagtt gtgcacacct 
003061 atatgttccc aattcatcct tatactgtgg ttgccatgat agcattgcga cattgagtta 
003121 ccctctgtcc cactcgtttt gtttctcgga ggatcctttt gtgacctctt gatgattatt 
003181 ttttgtgcac acatgacaac tttttttttt tgggtatcca gtgaagcatg caacaaattc 
003241 atgtcacttt gccagcggcg tccagacatc tgtcctcatt actcggtgtc atcaacttcg 
003301 tcacaatgga agagctttga tgatggaaat gtccgtggct cctccagttc agacatgtca 
003361 ctagacgaga cacaagctga tcaaggtgca tccagcaaca aatctataat tggtggtagt 
003421 gtctctcata ttcacagaag caacagccaa aactcagtag atgttccacc agaacccagc 
003481 gcagttcaac accctaaacc aactatacag cagtcagtag agaaacaaga aaaggaaaca 
003541 gatgctcttc ctgcccctgc cccagctgga gggggttcaa gacggttgag tgtgcaagac 
003601 aggataaaca tgtttgagag taagcagaag gaacaaacct caagttctgg taatagtgct 
003661 gcatgtacta gtaaggtggt tccaacgaaa ggtgagcacc gcagggtgcc ttctggtgcg 
003721 tccatggaca agttggtaag gaggtggagc aatgtaagtg atatgagcat tgatctaagc 
003781 aacaacgata gcagcagctt aaatgaaaag agggaaattg gaacccctgt tggaacccca 
003841 acatctgcca atttggaggt taattctaag gcaagagctg acggggacgc taatgggctg 
003901 aagcatgcag ttacatcatg ccaaaaagat acatctgatg ccttaccctt ggattctacc 
003961 actgcagatg ctttctcatc ctcaactttg aatactacct caccatcccc cttatcagcc 
004021 atcgcttctt cttctcctca gaaacagacc gcacctcgtg tggaagatga catggttata 
004081 acctctagca ttgagagtga gtcatccttc agaaaggagg taggggctag tcaaggaaaa 
004141 ggtgacgtga ggatgtcagg gcaagctgtt tcaagtgttt ccactcgagc ccgagtaaaa 
004201 acatctccaa ggccaacatg gccagaaaac aatgtaactt taagtagccc accattgtca 
004261 caggagcatg tacagatgac cgatgaggaa actattccca ttgttcatga agtagcagtt 
004321 aaaaaggaac agattgtaca gaaagataat agaggttctc gtctccgttc taaagagatt 
004381 catgctgaag cagatgtggt tggaaggaag gaccgaccct ctcgaacaac tggaaagata 
004441 tctgatacca gaacaagggc cacctccaac ccacgtgcta attttagggg ttcatctgtc 
004501 agggatgaag ctgcctctac agaagctgaa gttcatgatg ttaacttgca acggaaaagt 
004561 ctagcgcgga aggtagagga ttctgggaga aaggttgcag ctggctctga aatactgcct 
004621 caatcagatt gttctattca tcagggaact aatttgagca gacaatcatc cagtgctgaa 
004681 caggaattga gtttgcatgg aggtaaagtc aaattaatta gtgatggaaa tgctgttcct 
004741 ttggagcaga ctaagagacc gacaaaaggt agtcaagatc ggcatgatga actgcaaaag 
004801 aaagccaatg aattggagaa gctatttgct gcacagaagc taacctcttc taggagaggc 
004861 aagtcaactg atgtgcaggt tgagaacaca cccagggtga atgaggtaaa gcctccactg 
004921 gttcttccag agaggattta tacaaagcaa attgtaaagg agagtataac caatgagttc 
004981 gatgccaatg agcttttaaa gatggtggat actgaagggt ataacaataa cgtaccacaa 
005041 agcattatta gcttagaaga gtcaagggga aagttctatg atcaatatat gcagaagagg 
005101 gatgcaaaac taaaggaaga ttggaagctg caaggagaac agaaggaagc aacaataaag 
005161 gcaatgcgtg atagcctaga acgaagcaat gctgagatgc gggccaaatt ctctcggtct 
005221 tcaagtgttc ctgattcaac atatatttct cgttgcgctc ataagtttcc tcctttgcaa 
005281 tcagttataa aggataagga tcaggtatta aattctactt atagcagttt ttaagtagaa 
005341 aacagtagta cagaaaatta cttaactaca cacccttagt gcattgatgt gatttatact 
005401 gaaggttgtt tttttatgta aaaaaattta atactaaaca atcatgatat gtgtatcttg 
005461 aggagcccat aaggctataa ttctacgcaa agtgaaatga tgagttgtag tttatggttg 
005521 tttatatttt tgattttgcc tttcccaggg gatagattcc ttcttggtag aagaagaaat 
005581 gaatagtgac tatctatctg gtgatggttc atccaggagt gctgattcca ggaagcattt 
005641 ttcaaataaa gttgcctgca atcaaaagaa gtctattgct cctgttcata ggcattcatc 
005701 aaggaccgta agctctggtt atgcaaaccg taggaatcta ccagataatc ctcttgcaca 
005761 gtctgtcccc aatttcgcgg acttaagaaa agaaaataca aagccctcag ctggtctgag 
005821 cagagctgct ccaaggaccc agccaaaaag ttttatccgt agtaagagca tcattgaaga 
005881 gagtaagaat atatcaaaag atcaatcgag gaaatcacag tccatgagga agaacttaag 
005941 tcctggtgaa ttaagggacg ctacatccat gaatgacgtc atatacaatt gggctccctc 
006001 aaaaatttcc aatgatcaag ttgagggagt ttttgcttat atcacccata cagctggttc 
006061 aaccaagtct tttctcagga aaggcaatga ggctcaccct gctgtcggta tagctggatt 
006121 tgctcctcct atgtttgcaa atacctacca gaatggagat gatgacgatt ttctagatca 
006181 ggaagaagac tccccagatg agaccaaaga tgaagaatat gaaagcattg aagagaatct 
006241 tagggagagc gattttcctg ctgactcaga cagtgagaat ccaggaataa gtcatgaatt 
006301 tggaaattca gatgacccag gatcagaaaa tggtgatgtt tcttttccaa gtgacgcacc 
006361 cactcttggt ggttccaagt tcaatgcttt tgcaggaaac atgcatgata cacctggtga 
006421 agtaccagca tcatggagca cacgcccaca cctattcgct tatgcaaatg ataactcaga 
006481 tggtgatgct tttgctgatt caccaaatgg aagtccatca ccatggaatt ctcatacttt 
006541 agatcaaata acagatgctg atgtttcccg gatgaggaag aagtggggca gcgctcagat 
006601 gcctttcgtt ggtcccaatg catctcaaca gccgcggaaa gatgttacaa aaggatttaa 
006661 gaagctattg aaatttggga ggaagacacg aggtgctgat ggtttaaatg attgggtatc 
006721 cgcttcaact gcctcggaat gtgacgatga tatggaagat ggacgagatt tggccatggg 
006781 atcttctgat gatttcagga agtcaagaat gggttatcct tctgcatatg atggttttgt 
006841 tgataccgat gtttttgctg aacaaggtat tttcgcttgc cgatttatct ccactctctg 
006901 tttccattgt caacaaaagt ccctacttat tggtgacgtt cgaggaaccc cctccaaagg 
006961 accagaccca aaacttgaat aaaagaatat gatttcctag attgtcatat tcatgtgatc 
007021 ttgaaagtat ttttttttct cattcatgtg ttttccttac ctcattcatt aactctttgc 
007081 tatacacact tgtctgctta gttttgcaca cccgtttaat taatttttta atttgcagac 
007141 caatcacttc gcagctccat tccaaatccc cctgcaaatt tcagattgag ggaggatcaa 
007201 ctcactggaa gctcacttaa aggtacactt acagttacag atatatacta ctagtacctt 
007261 atttttttta ttttaagttg ctaatgtacc acataacata tgaagttttt gcttcttatt 
007321 tctgtctatc aatattaata tgttctcccc ccaaaaaatg cagcaccgcg atcgttcttc 
007381 tccctctcaa cgtttcgtag caaggggggt gatgcaaggc tcaggtgaca atgtgacata 
007441 cccttaagca ccagagctgg agtatataaa atatctcccg aaattaggta ccggtatcaa 
007501 attttcatgg atggtacgcg gacactgcta gcttgtctta taaatacaat atattctgta 
007561 tctatagtaa ttcatataag ctgccagttg agcgtttcct ctgttgtttg attattcttt 
007621 ttcctatcac ttgtgtagaa ttggacctct agattttttt ttctttcttt tgcggtattt 
007681 gatttcaatt ggcccagaga cactgtattc attttgttgt ttttgtgata tgcttgtatc 
007741 ttccaccccc atttgttcat tcacatatat cacaaattcg cggtatatga caatcttgcc 
007801 aacatgagcc tagaaatttc tgaaaggcat cttcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV834218 rbags7d23 598
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ863598 whsctal20a07 740
more... (Total Hit Count: 9 )
/rice/oryzabase