cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK111653     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0572000 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 23,752,048 -  23,754,577  ( + ) ;   2,530(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,752,048 -  23,752,871 ( + ) ;   824 (bp)
Exon 2 Location 23,754,058 -  23,754,577 ( + ) ;   520 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os07g0572000 Os07t0572000-01 J013133P16 203789 J013133P16 3463 LOC_Os07g38430.1 AK111653 33533 AP008213.2 255677434 BAF21969.1 113611591 NC_008400.2 297607852 NM_001066590.1 115472912 NP_001060055.1 115472913


Chromosome: 7 ,  position: 23,752,048 - 23,754,577 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acttttgatc aaatctcggg tccgtgtcga agagaggaga acacgcgtct cacacttttc 
000061 cccacctttt caccgtcggc gagggcgcgc cgccgctgat gtcgcagcag cagcaggcgc 
000121 cggcgccgcc gtaccggccg taccggcagg tgagggcggc gaccccgcac agccgcgccg 
000181 tctcgtgcgt gaggttctcc ccatgcgggc gcctcctcgc gacggcgtcc ctcgacggca 
000241 cggtcgcgct gctctccccg tcgtcgctcg ccgccatcgc caccctgcgg gggcacgccg 
000301 acggcgtgtc cgacatctcc tggtccacgg actcgttcta cctctgctcc gcctccgacg 
000361 accgcaccct ccgcatctgg gacgtccgcc ccgtcctcgc cggcctcaac cccggcagcg 
000421 gcggcggcgg cggcggcgcc cagcccgccg accccaacgc cgaccgctgc atccgcgtgc 
000481 tcaagggcca caccaacttc gtctttagcg ccaacttcaa cccgcagacg aacagcacgg 
000541 tcgcgtccgg ggggttcgac tgcaccgtgc gcatctggga cgtcaagagc ggccgctgcg 
000601 tccgcgccat cgacgcgcac tccgagcccg tcacctccgt ccacttcatc cgcgacggct 
000661 ccatcatcgt gtcggggagc catgatggga cctgcaagat ttgggatgcg gggactgggt 
000721 cttgcctcaa gacggtcatc gacgagaaga agcccgcggt gtcattctcc atgttctcgc 
000781 ccaatggcaa gtttatcctc gtcgccgcgc tcgacgacac actggtatga tcaattttta 
000841 ctgctattcc atgcatttag tgatcaatca gttaaagcag tgaaattttt ttgttcagct 
000901 atcatcgtct tattttaact gaactgcgat tgaagctcat aaataggccc tttggtgctc 
000961 tgagaaaatg ttgttatagt tgttgaggat tggaaacccc tgtctgttca tgtataatgt 
001021 ggaaaccaca atttggaggc aacatttttc ttccaaattg tagccaaata ttatctgtgt 
001081 acatggagta caacattgca gattctatct ggcttcgggc ctaattctct gcttttgttg 
001141 aagtacacct gacaatgagt aaaaaatcct tcttggttct cattaaaatg aaatagcagt 
001201 ggtacactcc acattgaata gaagcctatc gtagctttat ttctggtatt cgccgtggtc 
001261 tttttcatag gcagattgtt cttccaactg ctaattattt aatctagtat tactggcggc 
001321 catatagcac atcttgtttc agtttcacac agaaaagaaa ttatagttac caatacaatc 
001381 aaagatcctt cactctgagg atcatttcgt taaagccgtt gcccaagatt taaggtaacc 
001441 aatatgttac atgttgaact aagtatgtct atacttaccc agtttcacac caaacctcat 
001501 gttcttgatc tgtgtggtct tagtactgtg aaaagtttat cttcagatag ttatgttgtt 
001561 aaatggtttt aaaaaactgc ttctgaagtt tatttgggca catcagttca cacgataaca 
001621 gatcactgtt tcatgcataa ttcaagtaat tggaggcata tgaaagaaat atgaaacttg 
001681 cagtgcaaat gttgttatca gtgctttata ttagtattag actattaggt tgatccatgg 
001741 tattcattgt gcatacatac accttcactc cttcagccct tgtactgttt acatctgtaa 
001801 aactttatgg gcatttaggt caataatgct tcacatcaag caacattgta agaaattttg 
001861 gcattgtgtt attctatcat gggcttcctc atgtagtgat tttacttcat ttttcacgga 
001921 atgtttttat aaattagtta tttatttcat ttggaaaata tatggttatt gcaacctttg 
001981 cttcataagt atgtccttac caaatttcag aaactatgca actttgcaag tggcaagttc 
002041 ttgaagatgt acagtggaca tgttaacaga aagtattgcc tccagtccgc gttttccgtt 
002101 acaaatggga agtatattgt tagtggatca gaagacaact gtgtgtacat atgggatctc 
002161 caagggaaga acattcttca gaaacttgaa ggccatactg acactgtcat ctcggtgtcc 
002221 tgccatccaa cggagaacaa aattgcgtcg ggcggcctcg acaatgatag gactgtgaga 
002281 ctatggcttc aagatggctg atgaatttgc agaaggaatg tgcctgatac aactcttgtg 
002341 tgaacctgga cagcaatagc tatctaaaag agaaatatgc ttctactttt atggagcact 
002401 cttgtatgta tctatccctg gagggataag aaaagagctg ttaatttcac ccggcactgc 
002461 tttgtttcaa tgtaaacaat ccttttgacc tctggatatc ggtagttcat ctaatctcat 
002521 gatgttgaag

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ930500 whchan5e17 850
more... (Total Hit Count: 5 )
/rice/oryzabase