cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK106748     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0580500 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 24,144,131 -  24,145,465  ( - );   1,335(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,144,131 -  24,145,048 ( - );   918 (bp)
Exon 2 Location 24,145,178 -  24,145,465 ( - );   288 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os07g0580500 Os07t0580500-01 002115C06 109599 002115C06 16486 LOC_Os07g39220.1 AK106748 18681 AP008213.2 255677434 BAF22014.2 255677919 NC_008400.2 297607852 NM_001066635.1 115473002 NP_001060100.2 297607520


Chromosome: 7 ,  position: 24,144,131 - 24,145,465 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaaggagagg tggaggagag gaggggaggg gaggggaggt gagggacgga gctggtgggt 
000061 atgacgtccg gggcggcggc ggcggggagg acgccgacgt ggaaggagag ggagaacaac 
000121 aagaggcggg agcggcggcg gcgtgccatc gccgccaaga tcttcacggg gctccgggcg 
000181 ctcgggaact acaacctccc caagcactgc gacaacaacg aggtgctcaa ggcgctctgc 
000241 cgcgaggccg gctgggttgt cgaggacgac ggcaccacct accgcaaggt cagttcatgc 
000301 ttgcccgtct cgatctggtc tggtcgtgtt gctgtccatt tcttggatct tggatgtgta 
000361 gatctggccg gagctgagct gagctcgtgt ttcttgtttt ttttttggtc gttgcaggga 
000421 tgtaagccgc cgccatcgtc ggctggggga gcgtcggtgg ggatgagccc ctgctcgtca 
000481 acgcagctgc tgagcgcgcc gtcgtcgtcg ttcccgagcc cggtgccgtc gtaccacgcg 
000541 agcccggcgt cgtcgagctt cccgagcccc agccggatcg acaacccgag cgcctcctgc 
000601 ctcctcccgt tcctccgggg gctccccaac ctcccgccgc tccgcgtctc cagcagcgcg 
000661 cccgtcacgc cgccgctctc gtcgccgacg gcgtcgcggc cgcccaagat caggaagccg 
000721 gactgggacg tcgacccgtt ccggcacccc ttcttcgcgg tctccgcgcc ggcgagcccc 
000781 acccgcggcc gccgcctcga gcacccggac acgataccgg agtgcgacga gtccgacgtc 
000841 tccacggtgg actccggccg gtggatcagc ttccagatgg ccacgacggc gccgacgtcg 
000901 cccacctaca acctcgtcaa cccgggcgcc tccacctcca actccatgga gatagaaggg 
000961 acggccggcc gaggcggcgc ggagttcgag ttcgacaagg ggagggtgac gccatgggag 
001021 ggcgagagga tccacgaggt cgccgccgag gagctcgagc tcacgctcgg cgtcggcgcg 
001081 aaatgacggc cattattgcc gagcaaaaaa gatggttcct ttcgtggacc tcgagcacca 
001141 gctgatcatg gttgttgtta gatcagtact ggtcaatgtg tatgatcatg actacgcatc 
001201 gatgctgcga tttgggcgat ttcattctag ccttaggtta atcttgttgt tcaattcatt 
001261 cttcctggac ttgggaaaaa ggaagcaggg aaaaattgtt catcacggct gattttattc 
001321 acggcttcac tgttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252468 FLbaf161n20 1458
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ921685 whchan15c02 754
more... (Total Hit Count: 5 )
/rice/oryzabase