cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK100002     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0102500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 140,959 -  143,554  ( + ) ;   2,596(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 140,959 -  141,631 ( + ) ;   673 (bp)
Exon 2 Location 142,191 -  142,431 ( + ) ;   241 (bp)
Exon 3 Location 142,563 -  142,680 ( + ) ;   118 (bp)
Exon 4 Location 142,817 -  143,554 ( + ) ;   738 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0102500 Os01t0102500-01 J013135E13 210838 J013135E13 13582 LOC_Os01g01295.1 AK100002 6380 AP008207.2 255672756 BAF03663.1 113531280 NC_008394.4 297598437 NM_001048284.1 115433981 NP_001041749.1 115433982


Chromosome: 1 ,  position: 140,959 - 143,554 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gtctcgctcg gcgctcgtct ttctcccctc cattccattt ttccttctcc tcttcaacca 
000061 aacgaaaccc tagccgcctc ctatagctaa gctaagctcc ctcccctcct ccctctcatc 
000121 catcaatggg caagctcctc tgcgactcct cctccgccgc cgtcgccgtc gccgaggcac 
000181 cttcccctgc ccctgcgccc ccgctcctca cctggcccac ccccgacccc gaccccccga 
000241 ccagctggac cgccgtcgcc gcgctcgagg accagcagcg ccgccgcctc caccggatct 
000301 gggagcgcgg cgtcgcctgg aagccccccg ccacgctccc gctcccgccc ctcgtcttcc 
000361 gccttgacca cgccggggag gtcgacgccg acggcaactg cctcttcacc gccgcccgca 
000421 aggccgcctc cgccaagccc gacgcgcgcg acctcaggca ccgcatcgtc cgccgcttct 
000481 cccacctcta cgccgccgcc caagcccccg acagagacgc catcgatgcg gccgtgcgcc 
000541 acctctacgc gccggatctc aaggccggct ggggcgtcca cgtcgtgcag gagctcaagt 
000601 tgctcgcgcc caagaccctg cgccaccacc tcgacgctgc catcaacgac ctcgtcgacc 
000661 tcggcatcca aaggttggtt cttatcatca atccacaccc tcccggatcg atcccctctc 
000721 tcttttcttt tcttgcaccc tctccaatcg cgcggaattt ctttcatgcc acctcttgct 
000781 cctgtttttt tccccattga ttaataaatc tcctcctttt gcacatatcc ctactactat 
000841 tagctttaca attacgactt caattactac tgcgcctagg tcctgcctaa atgaaatggt 
000901 caaagacaac gaatttcttt ctcttaaaaa aaaagtgtca cctacgcgta tgcacatgta 
000961 gtgggaatca acttggatat ccaaaacttc catgcatgta ttagatgctg cctgacctat 
001021 tagttttagt atcgtcatgt tgaccaccct gtacagttgt acatcttcat cacacaagaa 
001081 tcccaagttg ctatgcatgt taaacaacaa tttatgcttc ctgctgcaac tgtacagttg 
001141 taacaaccca tggattggag cctgctcacc aaatcaacct gtttcctact atccacctct 
001201 gtatactagt cttgacgttc actgccttgc agggaaatgg cagctgaaac catatacagg 
001261 gagagatgca tagctgtaaa caatggagat agttgggcca agtacatgtc tgtctctggt 
001321 tccgcagagg acgagcacaa cataatcact ctgcagtaca cagaggaagg cttactgacc 
001381 atcgatgaga accgggatgg ccatgctgca gcttttggtg atgatattgc tatcgagtgc 
001441 ctggcaaccg agttcaagag agaagtttat gtggtaaagc ccgtgtgaat gttctgcatg 
001501 atagtttgct agtcaccata gatctggcac ttttatcttg catctctgtt tcatagtttt 
001561 ctcagcactt ttatctgcaa tctaacaggc ccttttgttt gtaggtgcaa gcacatggag 
001621 cggatgcaat ggttgatgag gacaactgtg tgttcttcct accacaccgc cctagaggag 
001681 aaatttgcga gccgccgatt tttcttttca tgaagggaac aggtaacttt gggaatcatt 
001741 tgcccagcaa cctagtacga actgaaaatt ggtgtctcaa caaaatttag ttgctgtcta 
001801 tgctgtcagt tgcaatgtgt ctggacttaa ggtagatgtc caattctttt tcttgcagca 
001861 tggtgtggtg ctggtgccga ccattatgag cctttgatag ccactgtcct ccagaatgtt 
001921 actccagaca aggcagctgt tgtactttga ggatgacttc cttctttttc gctcccccag 
001981 ttctagtcac tgatggagtc gagccaattt tgtaatctga gctagattgc tttattgagg 
002041 agcaacgtct atgcccaaga ggatctaact gtgcgccgca gggtcttgcc tgcttctgaa 
002101 gttgtgtact atgattcgtt ttgtatgctg atttgattag tgtgtgtttt gataggttct 
002161 gactgttgag gaggagattc agagtgtggt agaatatcgg atctagttta tgctgtgaat 
002221 tgttgtgcgg cattgtaaac cggcattttg gtattgcctc atgcctattg tgaggttttt 
002281 tttttttttg gttgcttgcg ttctagggac atgattggac atttgagaat gaggatcatt 
002341 cttttcagtt ttgggctacc cgttgttcca gtccttgctg ttgccacaat ctgactggag 
002401 cggggatgaa ttgatttgca aaagagatgt aatacttgtt ttctcatgca aattgtacca 
002461 acattgcaga gggatatggc tgctgtaaaa gtctcttctt tcctttgcaa aaataggatc 
002521 atccttcgtt gtatttatag ctttgaactc atttcatgca tgaggaaacc atgaaagaac 
002581 gctacttaag ctcgtg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ463584 bags32j15 626
more... (Total Hit Count: 8 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ259861 whh22j01 654
more... (Total Hit Count: 9 )
/rice/oryzabase