cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK099952     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0101600 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 71,816 -  77,349  ( + ) ;   5,534(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 71,816 -  72,935 ( + ) ;   1,120 (bp)
Exon 2 Location 73,468 -  73,981 ( + ) ;   514 (bp)
Exon 3 Location 74,619 -  76,205 ( + ) ;   1,587 (bp)
Exon 4 Location 76,333 -  77,349 ( + ) ;   1,017 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0101600 Os01t0101600-01 210788 J013123J12 13555 LOC_Os01g01150.1 AK099952 44280 AP008207.2 255672756 BAF03657.1 113531274 NC_008394.4 297598437 NM_001048278.1 115433969 NP_001041743.1 115433970
Os01g0101600 Os01t0101600-01 210788 J013123J12 13555 LOC_Os01g01150.2 AK099952 44280 AP008207.2 255672756 BAF03657.1 113531274 NC_008394.4 297598437 NM_001048278.1 115433969 NP_001041743.1 115433970
Os01g0101600 Os01t0101600-01 210788 J013123J12 13555 LOC_Os01g01150.3 AK099952 44280 AP008207.2 255672756 BAF03657.1 113531274 NC_008394.4 297598437 NM_001048278.1 115433969 NP_001041743.1 115433970


Chromosome: 1 ,  position: 71,816 - 77,349 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 tccccacaat cgaatcgaat cgaatcctcc tcctccaggc tccaagccga aaccaaaccc 
000061 tagccccgtc gatctccctc tcctcgcatg gcggctccca agcccatctg ggtgcgccag 
000121 gccgaggagg ccaagctcaa gtccgaggcc gagaccgccg ccgccgccaa ggccgccttc 
000181 gacgccacct tcaaggccct ctccgcatcc gccgccgacg accccgacca ggacgacgac 
000241 ctccaccgcc cctcttcccc ggcccaagcc tctcgggacg cctactccga cgcagacgac 
000301 gacgacgacg accgccccca tgcccctccc ggtccagtcg acccctccaa gtcctccgcc 
000361 gccggccccg gcatcgctgg tggttccgct ggtgcccccg ccaccttcac cgtcgtctcc 
000421 aaggaccggg actcgcgcag ggtcccaacc ggcggcgcgc gcgtccgcgt ccgcgtctcc 
000481 ccggcagctg gcgtcggcgg cgacgacctc gaaggtgcag tcaaggacaa cggcgatggc 
000541 tcctacgccg tcacctacgt cgtccctaag cgcggtaact acatggtcca cgtcgacctc 
000601 gacgggtcgc ccgtcatggg gagccccttc cccgtcttct tcagcgcatc caacactgcc 
000661 gccaccgtcg tcacctccac cttcccgccc acgcttccgg ctgtctcctc cgcctacccc 
000721 aacatggtca accagaccat gcccaacatg ccaaactacg ctggcgccct ctcggctgcc 
000781 ttccccagcc ttctcggcct cctccctgct gcgtctactg gtgcctctgg tggggttgtg 
000841 ctgcctggtg ttggtgcctc gcttggggag atttgccggg agcacatcaa cggcaagtgc 
000901 accaaggcca cagactgtag caagctcaac cacccgccac agcagctgct catgtccgtg 
000961 ctggctgcca ctacatctgt cggtgcgctc agccaggcgc ccatggcacc atctgctgct 
001021 gccatggctg ctgctcaggc catcatggct gcacaggcac tgcaggcaca tgctgcgcag 
001081 atgcaggctg attccaaggc tgcaggaggg gaggcttcag gtaatccctc aacctttaag 
001141 ggatgctgtt ttcttgtccc tagatgctct agggttatga gtgtatagtc tgcctcgcat 
001201 atttgcattg gtttcagttt ctatgctgtt gctcttgatt tttactatct tagtcatctt 
001261 tactactaca aactctatat ggaacttcag tttaattgca tcaatatttc tgttgttttg 
001321 ctgaagctag ctaaatgcct gtataattgc tatggatgaa aacaaatcat acactttctg 
001381 agcagattaa acgaatctga gtttttttta tcattaatac accctccata cttttgtcac 
001441 cgagagtgct tctgaaaata gctttgatac tgtgcatatt tgtcgctatt cagtcatctt 
001501 agatctttct agaaaacatt aaatttgtag ccgagacaaa atgagaaaac aatggtattt 
001561 gaagggccta atatgtaata ctgaagaact taaacagtgt ttcttttttg ccaaaggata 
001621 cattgcttac gttgcacgtt ccattgttgt aggttcaaca gataaaactg ataaaggtga 
001681 tgttctgaag aaaatggttc agattagcaa cctaagccca cttcttacgg tggatcatat 
001741 taagcagcta tttggatact gtggcaaagt ggttgattgc accatcacag actcaaaaca 
001801 tattgcctat gtagaatact ccaaacaaga agaagcaact gcagcgctgg cactcaacaa 
001861 catggatgtt ggtggtcgcc ccttgaatgt tgagatggcc aaatccctcc ctcccaaaac 
001921 taatttggca aatagcaatc tgcccatgat gatgcagcaa gctgttcagt tgcaacagat 
001981 gcaattccag caggctctga taatgcagca gacaatagca gctcaacagg ctgctgcgcg 
002041 cgcagccacc atgaaatccg ccactgaagc agcagctgca agggctgctg agataagcag 
002101 gaagttgaaa gcggagggct ttggtgggga aactgtcgaa gagaaggatg ccagagggaa 
002161 gtcaaggtag tgcttgattc ttctttaatt ttacctgaac tgctacggta tgcttttagt 
002221 atttgttgat tagatttttt ttttctcctc atattgtaac aaattatggt catttgctcg 
002281 taagatttag gtgacagaga ctgtgttctc atccctcatg gttcttatca gcttcaattg 
002341 taggaaatga aattagataa tatatttact tatgtgcaga aaatcttgct atgttttttt 
002401 tttcgtacta gaggtgattg atggggcaca tgcgattaga aagttgtgct ttattttgaa 
002461 gtggtggctt tagttttcaa caatgtggtt ctgttattcc atatatattt cacatttttt 
002521 ttgtatatat gtatgtgtgg ttttcttgta tcaatattca aagtgaagca ttcataagag 
002581 aatgggagat gtctcggcat gtcaactttc agcaacatga cttttttttt tgcgatgagc 
002641 aacatgactc attaactgca tgggagcatg aaattttcac ctgtcacatt tttaacctta 
002701 gacatgcccc tactttgaac aaaaagaaaa aagaaaaaat acttcaattt tttactttat 
002761 acatattgca agatggacac tgactagtat gcctatttta taggtcgcca tcaccttctg 
002821 cccgtagatc gaaatctcgg tcaagatcac ctatcaagta ccgccggagc aggcggtcta 
002881 gatcatactc tccgccggtt agacacacac gagggcgtag atcacgatca ccatcaagat 
002941 cttaccactc aaagtatggt agtgatcgat cttatcggga tgatagagac aagtatggca 
003001 ggtctgggag aagagagagc gaccgatctc gtgaccacta ttcatctagc tcaagaagaa 
003061 acagaagtag aagtataagt ccaaggcata agaagtcctc cagatctgat tctcggtcac 
003121 ccaagcgaca cagagaagaa agtttaagcc cttcgaaatc acggaggtca gctcgagctg 
003181 gttcaaggtc accaggacag cacaaaggaa gcaaattgtc gccaactcgt gaccatcatt 
003241 cttctcgccg tagtaggcgt tctagatcca gatctcaaga gaagaatcgc aacagtgata 
003301 aaaaggacag caaaaaatct gagatggagg ataaaaaaag gagatctgat agaggcaata 
003361 gaggtgacaa agatgaaaag tatctaaagg atccaatgga agataagaaa ctagatgtgt 
003421 cttctgttgc tcataaaagg agttcatccg catcagaaga tgaaatgctg aatagtaatt 
003481 ccaagagatc taaacatgat gctgctttgg agtgtcatga gaggaaggat gaggatcata 
003541 ttgaggagga cagaagggat ttggattctg tgggatcaaa atctgagaag agaagcctag 
003601 gaaatggtga tcatgaaaaa caaaatcatg atacaaatag gaaaacagac aagagtcatg 
003661 acagggatga ttcttctcgt aaggacagaa aatacagaga ggatgaatca agacattcta 
003721 gagatagatg ttcccgtcat tcatcttcaa gatcccatag aagttcaagg cattcaaggg 
003781 aaaagtatca tggagatacc actgatcagc ataaatcaaa gaaatcagaa gagggttcca 
003841 agtctaggaa ggatgattgt ctccttgatg ataccttgtc ttcagataga aggaaagttc 
003901 agagcgagga ctctcctcgt aggaagcata accagttagc agctagttca gatgttcatg 
003961 gcatcaacca tgatactgga gttaaggtgc caaatgattt ctcagaagct gatcagggta 
004021 tccaggaagc caagcaggtc gttcatgaaa ctgatatgtc ctctgcacca cgccttgagg 
004081 acccatttct tgcacaagac aaacaagata aacctattgt tgctggcctt aatgggctac 
004141 atgaacctgg agttgatggt gcatttgtgg gcactgaaga gtctgctata tgatattaac 
004201 cagagtgttt acttgatggt tgctatatca ttgagttggc tgatcacagg atctacttga 
004261 tcagtggatg cagatagatg aattggtgtt tgttatcttc ctttctgatt taggagtttt 
004321 atttgcagga tatgaagaac atggagaact tgagtgctga tcgaagtgtt catctgatct 
004381 ataaaaatgt actcattaac tcttcagatg gagatttttt ctgtggagta aacttctaga 
004441 tgtaacgctg gagcttgtga ggtgatttag tactgtgagg tcaaaccaac catatatttg 
004501 tcgttgcagg cttgtggttc catgaagagt tggagctcat tctggggtgt caattgaaga 
004561 tacaagggag gtcacacttt tccgtactca agtaaagtcc attatacaag gctatataaa 
004621 ccacttctct tgtaggctgt gatacatttc aattggcatg ctttggctag tgcaatgatc 
004681 caaagatgtt tctacatgta aacatccttt gattaagttg acatgctccc tgtatttgtt 
004741 atgcgtatga tttgcattat gtctgcatca gtaatggttg aaaagatcta tagcttaata 
004801 cgtatttaaa tcttagaaca cgtaaccagt ccattttact ttgtattttg attaatgcag 
004861 agacttgccc tgtggttctt gtttactatc ttccctgctg cttaattctg atcagtccat 
004921 ctaaaattaa tgtgtatttc taaacaaaga tagtatatgt gtgtgtaatt gagtatatat 
004981 cctggtattc attgtttttc tttcccttct gttttctttt tgttcctttt ttcctttttt 
005041 ttttctgaga aacagggtcc atccgagagg ccaatgtaag tgactggtga ggaaattgtt 
005101 gataaagtcc gagcaacctt ttacccttga tagttccaga gataagaagc atatctttga 
005161 aaagtagcat tccttgtgtc tttcttttgt gactttgaat ttgtgttggt ttagttacta 
005221 agcactgcct ctgcaaagag atattggtgc tttacttgct gtgattggtg gtgtcattgg 
005281 aaaacctgtg caggtttttc ataggcggtc gctgttggag tatatctgag gggaggtttt 
005341 tcagttaagt ctaagagctg cctgcctgta gaagaggtaa gggtttatga tgtgctcttg 
005401 ataagattta aacacccaca gattattgcc tctgttcggt tttgatcttg atttggggtt 
005461 gtgcttctgt ggatgtaata cactcgtcca ctgtattggg ttattgttag aatcttgata 
005521 ttagttttta cagc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV834056 rbags22a13 455
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ651432 whem4n10 592
more... (Total Hit Count: 3 )
/rice/oryzabase