cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072868     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0678600 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 29,386,976 -  29,389,686  ( - );   2,711(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,386,976 -  29,388,873 ( - );   1,898 (bp)
Exon 2 Location 29,389,479 -  29,389,686 ( - );   208 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os07g0678600 Os07t0678600-01 J023141O10 208931 J023141O10 7434 LOC_Os07g48100.1 AK072868 19679 AP008213.2 255677434 BAF22550.1 113612172 NC_008400.2 297607852 NM_001067171.1 115474074 NP_001060636.1 115474075 Q7X996 CIPK2_ORYSJ


Chromosome: 7 ,  position: 29,386,976 - 29,389,686 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attgctgcgc cgtgctcgaa cagatctcga tctcgatctc gatctccgca cgcaccaagg 
000061 cgaagccaat tccactacca ccgctcttcc ttcttctcac tccttctcgc gactgcggcg 
000121 agggtgagtc tcctgtcgtg agaatttcgg tctaccggcg gcggcggcgg cgttgggtgt 
000181 tcttcgcgtc gtcagacgtc gggatctggt acggttctcc ttatctctgg ttgttgataa 
000241 tctatatgga tctatggttt gttgattcgt ctgtatgtga aaaacatcat cttgggttag 
000301 cgaggggtgg gtttcagatt ctcaggtcga gtctccagta cactggttga gtgctcgttt 
000361 ctagatctgt atttgttctg caacgcgagg tgttgtggtt gatgcgattc atgcgaaaac 
000421 ttaatctgtc atacatactt ggaagggtaa aaaaagaaaa aaataatctc ctttctactg 
000481 gagatgcata gcgtgggaat tataattagc ctcttgttat ctgctagcct ggttgttgag 
000541 cgaagctttc ggatccaacc ttttaattca gggtagcttt atgtagtaca gaaaactgtg 
000601 taactgtatt gtgtttcctg ttactttctt ttaaaacaag ttctggttga aaagcgtaga 
000661 aacagtctta actggcatgt cttgttttca tgcatatgtg ctgtgcagta gattaatcct 
000721 tttacctaga acttctcaat tgagttttat gttagttgat tccaactagt agttgtccat 
000781 gactgacctt attgcatctt cttcttttgg cagaattact agacttccaa taagaaggaa 
000841 acaccttagg gaatgcagaa agatgtgctt gcatgctaga gagctacctt gtgagggaat 
000901 tggcagggta gcaagccata tttctccttc cacaactctt catgacattg gaacacaaga 
000961 gtatatacag cgcttgctcc atgtgctctc gcactatggg gttcgacgtg gcaactcaac 
001021 catcttctta gatcaccatc ttggtggaga cggttgaagt cacctatcat ttctaggctc 
001081 ctggttacca cactttgagc tttgggatta ctgctttctt tggcgtgatg gcggagcaga 
001141 gaggaaatat gttgatgaaa aagtatgaga tggggaaatt actcgggcaa ggaacctttg 
001201 ccaaggttta ccatgcccgt aacaccgaga cttctgagag tgttgctatc aagatgattg 
001261 ataaagagaa ggttttgaaa ggcgggctca tggatcagat caaacgtgag atttctgtga 
001321 tgaagttggt gaggcatcca aacattgtgc agttatatga ggtcatggct accaagacta 
001381 agatatattt tgtgctggag cacgtcaaag gtggagagtt gttcaacaaa gttcagagag 
001441 gaagactaaa ggaagatgca gcaaggaagt acttccaaca actgatttgc gctgttgact 
001501 tttgccacag caggggtgtt tatcaccgtg atttgaagcc agaaaatctt cttcttgatg 
001561 agaacagcaa tctgaaggtt tcagattttg gcctaagtgc tcttgctgat tgcaaaagac 
001621 aggatgggct gctccacaca acctgtggca cacctgctta tgttgctcca gaagtgatca 
001681 acagaagagg ctatgacggt gctaaggctg acatatggtc ttgtggagtg atactctttg 
001741 tgctattggc cggctatcta cctttccatg ataagaactt gatggatatg tataagaaga 
001801 ttgggaaagc agaattcaaa tgtccaagtt ggtttaatac cgatgttcga aggctcttgc 
001861 tcaggatact tgatcctaac ccaagtacaa ggatctcaat ggacaaaatc atggaaaatc 
001921 cttggtttag gaagggtctc gatgcaaagc tgctcagata taatctacaa ccaaaggatg 
001981 caattcctgt tgatatgagc acagattttg actccttcaa tagcgctcca acattggaga 
002041 agaagccgtc caacttgaat gcttttgata taatttcttt gtcaactgga cttgacctct 
002101 ctggtatgtt tgaggagtct gataagaaag agtccaaatt cacatccacc agtacagctt 
002161 caacaatcat atctaagatt gaggatattg ccaagggctt gcggttgaag ctcacaaaga 
002221 aagatggtgg actgttgaag atggaaggct ccaagcctgg aaggaaaggt gttatgggca 
002281 ttgatgcaga gatattcgag gttaccccaa actttcatct tgtggagcta aagaagacaa 
002341 atggtgatac acttgaatac cgtaaggtct tgaaccaaga gatgagacca gctttgaagg 
002401 acatagtctg ggcttggcag ggtgagcaac cgaagcagca gcagcagcca acgtgctaaa 
002461 aaactttgac aagggcaagt tttttgcaat ttgagtcgac ttccaatcgt ttatgtattt 
002521 ctgcagcttt tgttcctctt gttattcatt ttcattcctc atgtattgtt aatattaata 
002581 tcgatgctat cttcaaatga ggatttattt gaaaaaaatg ttgagtttgt ttctggatgt 
002641 tactgttttt gctcatggag aactgtaata ctgacatttt tcatttatca tgacgcaaaa 
002701 agatgcatat t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252590 FLbaf163a20 2179
more... (Total Hit Count: 34 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ700863 whsd2m10 668
more... (Total Hit Count: 140 )
/rice/oryzabase