cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK072683     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os07g0108900 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 7
RAP - Location, Length 470352 -  476655  ( - );   6304(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 470352 -  470721 ( - );   370 (bp)
Exon 2 Location 470877 -  471040 ( - );   164 (bp)
Exon 3 Location 471552 -  471593 ( - );   42 (bp)
Exon 4 Location 471730 -  471771 ( - );   42 (bp)
Exon 5 Location 472147 -  472246 ( - );   100 (bp)
Exon 6 Location 472396 -  473873 ( - );   1478 (bp)
Exon 7 Location 476290 -  476655 ( - );   366 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
UniProt
Accession No
UniProt Entry
Name
Os07g0108900 Os07t0108900-01 208723 J023140K24 10947 LOC_Os07g01820.1 AK072683 16292 Q6Q9I2 MAD15_ORYSJ
Os07g0108900 Os07t0108900-01 208723 J023140K24 10947 LOC_Os07g01820.2 AK072683 16292 Q6Q9I2 MAD15_ORYSJ
Os07g0108900 Os07t0108900-01 208723 J023140K24 10947 LOC_Os07g01820.3 AK072683 16292 Q6Q9I2 MAD15_ORYSJ
Os07g0108900 Os07t0108900-01 208723 J023140K24 10947 LOC_Os07g01820.4 AK072683 16292 Q6Q9I2 MAD15_ORYSJ
Os07g0108900 Os07t0108900-01 208723 J023140K24 10947 LOC_Os07g01820.5 AK072683 16292 Q6Q9I2 MAD15_ORYSJ
Os07g0108900 Os07t0108900-01 208723 J023140K24 10947 LOC_Os07g01820.6 AK072683 16292 Q6Q9I2 MAD15_ORYSJ


Chromosome: 7 ,  position: 470,352 - 476,655 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 actgacaccc gtccccaaaa gcaaagaggc ctctctctct ctctctcgcc gatccctctc 
000061 ctcctcctct tcttcttctt ccactagcta gttcgtcttc ctccttcagc tagcttgtag 
000121 cagctaaggt taggtcggat cgagatcggg atcggccgcc ggcgagcggc gagcggcgag 
000181 gatggggcgg gggaaggtgc agctgaagcg gatagagaac aagatcaaca ggcaggtgac 
000241 gttctccaag aggaggaatg gattgctgaa gaaggcgcac gagatctccg tcctctgcga 
000301 cgccgaggtc gccgccatcg tcttctcccc caagggcaag ctctacgagt acgccactga 
000361 ctccaggtac acctatagcc tgatcgattc cttgccattt ctggagcacc tgagcccgcc 
000421 tgagatggat gaactcaata attctcctag ctttttgccg tttctggccg gccgcttcca 
000481 tggatttcag ctgctgctct ctgaatttgc catgtttggt ttgtgcatct ggttgcatgt 
000541 gtgctacagc tgatgatttt atgcttcact agtgctgcaa cacatgcaac acagtccaat 
000601 ccaagctagc tcagctactc caggaggagg agtcagctgc atgcctcctc atttcgggaa 
000661 atcatctctc tctctttcta ttttttccct ttcctttctt gtttcccctt tttctttcct 
000721 gctagcttgc ttctctctct acaccctgca tacccttttt gggattgatg gccggtttta 
000781 attaatttcc cctcctttct ttagttaatt actaccctac tactaattca tctcctcccg 
000841 atcctctcaa tttctcatca tatggagtac tactaaaata tatatatgta gtacgcactt 
000901 ggtgtggccg gtctttgtta acatcatgtg cttgcttaga ttcaagggga ttatatatat 
000961 aagaggatct actactaagt gtactttgtg attacatcag ctatctatgt agctgatgat 
001021 cttgctttgg tcttttgctg atccattgag ctagtgctaa ttctcatcac ccttccattt 
001081 gatgtactgc aaatagtttt ttattcattc gcttcttctc cctcttcccc atgtgatttg 
001141 attgctagct ccttcctgac ttttatttgg gttgatttcg tcacatcttc ctctcaaatt 
001201 aatctcatgc gcgtgccttt gttctccacc tgtcaagaaa ttaattaaag aatatatcac 
001261 acgaattacg aggagtccac caccagtgtc atgcactcct ccctattgtt cacagtcaca 
001321 gctgatgcat gcaaaacatc ttctgtttct caagtaatta attcccctct tcttgtgagg 
001381 cttggcttaa aattactcaa acagctgttt ttcttgctta tgcatcatct tcctcagata 
001441 ccaaaacgtt ggagatggac agatctggcc tttcctcttc ccttctctct catcctcttc 
001501 tatgtttctg cctcttctta tgatgaatct ttatttggta ttattcacgt taagcatctc 
001561 tttaaagagc cctagatcaa atttgatcta tctcttttgg tttaacttca tggccagttg 
001621 cttgtgtgtt ttggtctaga acgaccacgt acgcgagata tttccttttc tgctcagctg 
001681 attaattaat aatgatggga taattcacta attattctgg agttagatca agagatgtac 
001741 ttaaacatcc tgtgacacga tgacttcaaa aaataatctt gctctctgta aaatcacata 
001801 atagctagcc atcgcgcgtg tttcagaaaa ataatttatc ttgcttgcta gcttttgctc 
001861 aaaatgcgtt tctgacgtct aggtaaagag gacttttacg gtcgtctgtg ttgtactgga 
001921 acagtgccct gcacactccc cagcgtcaag atcagtctaa ggcgcttcat ttctagctca 
001981 gaaatcttca cttatttgat cttaattata gatcttcctg agatagatct aagggtgttc 
002041 cagtaaaaca gaagaagtca agttcttcag gatcctcgtg atataattaa actgtagtct 
002101 cacaatctta ctgatcatca aggagtctgt aaacacctat acgtacggct ataggattat 
002161 ggggaggttg gtctaaaata aaggtgttaa attacttgca attatcaaga tgtgcaaatc 
002221 atcacccagt aattcaatgg tgctattata tatagtctgt tttgaacagt tccactggtt 
002281 ttgttagggt ccttgctgat ggctgtttaa cggtgctgtt atatataatc ttgattattt 
002341 tttttgctaa attttcctaa gcaacccact tcaaattttg gaatgggtga attcttatgt 
002401 tcacaccctc atatcacatg tgtcatgagg agcttttttt tcgtcacaca gtcccataca 
002461 acgtccctgt tttcttgaag ataagataat tcatgcatgc acttgaatat aaccgagtgt 
002521 tttcatgtgc atgcttttta tttggctgtg tcgagtgttt agacagcaaa agagctcttg 
002581 tgcatacaaa tgccgatatc tatatattag tagtcttaat ccacatttca gctttaattg 
002641 cttggaatag tttggtaggc attcctagct tcagaccatt taaatatact tcctaaacgt 
002701 tgtcatgaga atgctgaatg caaagtattt acatatatag tggactaatt tcagattctg 
002761 ctcatgatgg ttttccctgc aggatggaca aaatccttga acgttatgag cgctattcat 
002821 atgctgaaaa ggctcttatt tcagctgaat ccgagagtga ggtaaaacac agtaggttgt 
002881 atgatatata acttttacat gaagggaata ttattgttcc ttttctattg cattagcatt 
002941 tcaatcatat catttccttg tggcctttta aatcacatgt taacaaagca gtttttctga 
003001 attctatcgt tctacttgcc aaaactagat gttggtaacc ttctgtttta tactttttaa 
003061 cttcaaacct cgtgtctttt gcactctggc atatttctta aaatttctac ttattgggat 
003121 atcatgcagg agagtcctca ttcccttcat ttaatcccct caaattttat ttattatggt 
003181 catacaatta atgggccaca tgcatggaag tcgatcgcca gcttgcgatc agcatcctat 
003241 cattaatgtt atgatctata ctaattcttc tgtaaataaa ttaaaattgc actagttttt 
003301 aactaaatgc tactattcta tttttttatc catactccgt ttgagtggtt tcttttgtgt 
003361 ttcatgaagc aatataatat gcttaagaaa acatagaaac atgcacaata caataatagc 
003421 gctggtagaa tccggttgga gaccaaatgt ttcgatattc taagtgcata tttatatata 
003481 ctaagtaaaa ctgtaatcat aaacatgcat atggactgtg atcgatgaaa tgtttcttca 
003541 tttttttttt caagataact cttccccagt tgacaacatg cactgcatcc agaagtactc 
003601 atggtatttg ttttcagtac tgtttgatga gtaaaacttt ggtaagtgtt aaaaaatgat 
003661 gataagtgca aatatttgtt cctttaccac ttccaccttc ttggagtaaa gaaaaaaatg 
003721 tgtgtggttt ggcaaagttg ttgcatatat cacggcatta gtgtgcggat aatgcgaata 
003781 aatgcatcaa taagcactag gagtaagtta attagttctc taccttaatt gaaaagttca 
003841 tgtacattta aaaaaattaa acatgcctct ttttatcatt tgttgaattt ctacatttat 
003901 caagacagca aaggagttct catctactaa taaattaatt taaggagcta taactccctt 
003961 aattttatca aatattcaca tacacggttg catttgagga ttttctatat actccactaa 
004021 atgaggatgc atttaggttc tttataatat tttatttcca tcgtttcatc atctgtttat 
004081 gtttacagta atttagtaat agttctctaa ttttgacagt aatggttggc tcacagaaaa 
004141 catcaaccaa ccatatatat tggtttatac tgacaaagag tttttttttg tacagggaaa 
004201 ttggtgccat gaatacagga aacttaaggc aaagattgag accatacaaa aatgtcacaa 
004261 gtaatcgata tatatatcca atttctataa taatgttaaa taaatttcga actaattgca 
004321 ctaattatta tttttaaacc aatttaaaag agaacttccg gtattgactg ctgaagatga 
004381 cgtgaaacta acttatgtat cttgtgtaga cacctcatgg gagaggatct agaatccctg 
004441 aatctcaaag aactccaaca gctagagcag cagctggaga gttcattgaa gcacataata 
004501 tcaagaaagg tagtattttt ttggatagtg gaatcttttt atttgaactc ccgacctcta 
004561 cacaccaaat gtacagaaaa aaaggagcaa attattaaaa gaaacgtagt aatatattta 
004621 gcatgttctg tttcaaactg gactgaattg aaataattca tgcatgcgca tgcctgagtt 
004681 acataaatat atatccaaat gtcttgttgt cactgctact ttgaaacaaa tgttcttttt 
004741 tttttccttt ttgagaaaat atatgagtaa atattttcag cacattctgg aggaacaatt 
004801 accaaatata aactttttag cacattctgg agtacaatta ccaaatatga cggactaact 
004861 agaacaatat gtttgtgttt gcagagccac cttatgcttg agtccatttc cgagctgcag 
004921 aaaaaggtga ccaattgaac tgcactactg tgtatgcatg tatatatgaa tcgtgcatgc 
004981 aaaccgttgt tagctagtag ttagttatag tttactcttg gttagtctca actgatagtg 
005041 cagttttctt gcatgagtgc aggagaggtc actgcaggag gagaacaagg ctctgcagaa 
005101 ggaagtaagt tgtcgaaaat atagtattta ctgctgctta tattaattaa ttcattctgc 
005161 ttgactagcc aatggaggca ctaaacataa ttaattcatg cgcattggtt ttgatcaatt 
005221 gatttatctt gttgacaatt ttccaatcta tccatgggtt taattactag ttttgtcaat 
005281 ggaggcatta gagataatta attcatatgc gcactcgaaa gtttgaaatt gctgtagttt 
005341 acttgttggg tggatcatat cgccaataat tttttccccc acagttgacc gcaaatgaga 
005401 agtaattttc tttgccttct agacttgacg gctatttttt tagcgtgttg gcaattgaac 
005461 atatgacctt gggttaaaac cacacatctt ttatcattgc gctatcaaat acatctcgat 
005521 aaatttgtcc cttactagcg gtttatgtgg tttccttggt ggtcggtttg tgcctcttag 
005581 aaaaaaatcg tgatgtttgt agtgtgcgca tgcagctggt ggagaggcag aagaatgtga 
005641 ggggccagca gcaagtaggg cagtgggacc aaacccaggt ccaggcccag gcccaagccc 
005701 aaccccaagc ccagacaagc tcctcctcct cctccatgct gagggatcag caggcacttc 
005761 ttccaccaca aaatatctgg tacgtatatg tctgcattca tgtctcatca gttgctattc 
005821 agttataaat taatctgtta ctgcactaat taagatcgat cacacccttg ttaagttcta 
005881 agtctctaat taattaactg catgtatata attatgcaca tctgtgcata gtagctaccc 
005941 gccggtgatg atgggcgaga gaaatgatgc ggcggcggcg gcggcggtgg cggcgcaggg 
006001 ccaggtgcaa ctccgcatcg gaggtcttcc gccatggatg ctgagccacc tcaatgctta 
006061 agatgatcat cgtcgtcgtc gtcggccaaa cagctgccgt atgcaccgtg aatcatggga 
006121 gcaaccttga atgaattgaa gtcattggta tcgatcctag cgataatata tatgattctc 
006181 ctaaaatgaa attgatctca aaaaaacaaa cctagcgatt aagctattct tatatatgtg 
006241 tttgcctgct gccccctacc ctacaggcta catatgattt gcaagaaatt aattatgagc 
006301 aagg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249833 FLbaf58g24 1273
more... (Total Hit Count: 28 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ213269 wh21j22 658
more... (Total Hit Count: 64 )
/rice/oryzabase