cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK069726     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0150700 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 2,675,692 -  2,679,925  ( - );   4,234(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2,675,692 -  2,676,049 ( - );   358 (bp)
Exon 2 Location 2,676,146 -  2,676,220 ( - );   75 (bp)
Exon 3 Location 2,676,339 -  2,676,395 ( - );   57 (bp)
Exon 4 Location 2,676,485 -  2,676,604 ( - );   120 (bp)
Exon 5 Location 2,676,720 -  2,676,836 ( - );   117 (bp)
Exon 6 Location 2,676,924 -  2,677,043 ( - );   120 (bp)
Exon 7 Location 2,677,129 -  2,677,218 ( - );   90 (bp)
Exon 8 Location 2,677,313 -  2,677,438 ( - );   126 (bp)
Exon 9 Location 2,677,566 -  2,677,619 ( - );   54 (bp)
Exon 10 Location 2,677,856 -  2,677,936 ( - );   81 (bp)
Exon 11 Location 2,678,025 -  2,678,132 ( - );   108 (bp)
Exon 12 Location 2,678,218 -  2,678,289 ( - );   72 (bp)
Exon 13 Location 2,678,885 -  2,678,947 ( - );   63 (bp)
Exon 14 Location 2,679,476 -  2,679,925 ( - );   450 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os07g0150700 Os07t0150700-01 205464 J023030M13 4925 LOC_Os07g05620.1 AK069726 21203 AP008213.2 255677434 BAF20815.1 113610437 NC_008400.2 297607852 NM_001065436.1 115470604 NP_001058901.1 115470605 Q6ZLP5 CIPKN_ORYSJ
Os07g0150700 Os07t0150700-01 205464 J023030M13 4925 LOC_Os07g05620.2 AK069726 21203 AP008213.2 255677434 BAF20815.1 113610437 NC_008400.2 297607852 NM_001065436.1 115470604 NP_001058901.1 115470605 Q6ZLP5 CIPKN_ORYSJ


Chromosome: 7 ,  position: 2,675,692 - 2,679,925 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aagttgcaac ctcccgcctc acccgccgcc attgacgacc accgcgctcg tcccatccca 
000061 tgcctgcggc cgtgaccgcg aggttgtgag gagaagagag tcccaagaga ggaggatcga 
000121 tgcggcagcg gcaggccggc gagcaggagg cggagctgtt cgtccagtgg aggccctgcg 
000181 acaagaagcg gtcctagtcg cccgccgccg ctcgcccact cgccggcgtc gtcgatctga 
000241 gagggacagg ggaagaggaa gaagcagagg aggaggagga tgagcgtgtc gggcgggagg 
000301 acgcgggtgg ggaggtacga gctcgggagg acgctcggcg agggcacctt cgccaaggtc 
000361 aagttcgccc gcaacgcgga ctccggcgag aatgtcgcca tcaagatcct cgacaaggac 
000421 aaggtcctca agcacaagat gatcgcccag gtcagctcac ccatactatt ttctatcccc 
000481 ccaatcgatt ctcgatttgg agaggtctcc atggatttct tcccatgatg atagtactgt 
000541 tcgaatttct cgccttcttg ttttttttta atcatatcat acgctgttct tgagtgaatt 
000601 tcgtggacaa tttcaattcc tatacgtacg agtcccaaat catgaacagt ttgtactact 
000661 gctgttttgt ttcctctcac gacaagacgt gatgattttg ttttaaccag aaacagtaaa 
000721 cattactaat tactactagc gttcttgctg caaaaaaaaa aaggtttggt atcgttccaa 
000781 aattgcgttc ttacttccaa aattgcaaca gcctagactt tgacgtgagg ttagcacggg 
000841 cgcctcgtgc agtgttcgtt ggaacttgtg ctgagttagt tattattaat gtgcatcaac 
000901 tttggcttag cttctgactt tttgtggggg agttctgact ttgatgtgtg tttgtggttt 
000961 gtgtggtggt gtttgcagat aaagcgcgag atctccacca tgaagctcat caggcacccc 
001021 aacgtcatcc ggatgcatga ggtttactaa tctccaatca ttaatctcag ctcatcttgc 
001081 ccatggaaaa attttgtaac tgatgataag tccaccaatg aaatcgacta atcataagca 
001141 gagctcgtga ttttggttcg aaattttcga aatttcgggt ctaccagtgg gtcctggttg 
001201 gatgtgattc ccagtcttga attgtggatt ttttttttaa ttttgtaaaa tttgttcgaa 
001261 ttcagctaga gcctgttcaa aattcatttt ttttctggtt tgaaacttct gaaaaatttt 
001321 ggtccccccc agattttttt tttctaggcc gagattgtga accctgctaa ttaagttaag 
001381 atatggttct caaggctttg agcaatctga aattatgaaa aaccagggta aattaaattg 
001441 gtcaaggatg acataatgaa caagttgttc cttcacatga aaagttgcaa ttagagatcg 
001501 ttctggaagg aaattcctgt gacactaaac tatgtgttat ctgaaacttt cctagctctt 
001561 gctttctgat attttccttt tgttgtcttg gctttatgtc gatctccact tagtggtttt 
001621 gttttcttct ctgaaggtga tggccagcaa gaccaaaata tacatagtga tggagcttgt 
001681 caccggtggt gaacttttcg acaagattgt gagtgcttgg ccttttctat cgacatctga 
001741 attactcttt atgctatgca cacatgttca atttgtcata attcctgtta taggcttcgc 
001801 gtgggaggct gaaagaggat gatgcaagga agtattttca gcagctgatc aacgctgtcg 
001861 attactgtca tagcagagga gtctatcacc gggatctcaa ggttagcggc gtttaactgt 
001921 ttgcggtgtt tactactgct atgcaagaga gccgagaagc agtgaattga tacacaaatt 
001981 caatttcagc ccgaaaatct tctgcttgat gctagtggca ctctcaaagt atcagatttt 
002041 gggctgagtg cactgtctca acaagtcaga gtaagtaatt tgactcttcc tatttattct 
002101 tttattatct ttttgtggag agtttccttt tattcaaagt gatgaaaagc cgagagttgt 
002161 tagtcgtaaa aaaattagca tttcaattgc tttctgtaga ttccatttgt tttctacatc 
002221 ttttcacatg gtaatacaga tagtttcaga tccatctgaa taaagttctt acattagtgc 
002281 tgcatatctt tctgtttact ctgcaggagg atggtctgtt gcacactacc tgtggaactc 
002341 ctaattatgt tgctcccgag gtaccttctt acactcatac attaaactag tatatagtta 
002401 ttatcatcgt tggattgaat atttgttttc atgttactta tctaaaaaaa tatttgttct 
002461 catgtttcaa taatattgtc tgtgcaggtt atcaacaaca aaggatatga tggagccaag 
002521 gctgatctgt ggtcatgtgg agtgattctc tttgtcctca tggcaggcta ccttccattt 
002581 gaagactcaa acctcatgtc actttacaag aaggttggtc cctcttaacc atgtcaaagg 
002641 attgttggtt tatgaaccct aaacaaagtt tttgtttgga agattaatgt gattattgct 
002701 catccagatc ttcaaagcag acttcagttg cccgtcttgg ttctctacaa gtgcgaagaa 
002761 gctcatcaag aaaatactag atcctaatcc tagcaccgta tgttttgcag cattttaacc 
002821 ttcatttctt tggagcattc ttatacataa gtagcttatc ccatcgttat ctccttgtgc 
002881 agaggattac catcgcagag cttatcaaca atgagtggtt caagaaggga tatcagcctc 
002941 caaggtttga gacagcagat gttaacctgg atgatatcaa ctctattttt aatgaatctg 
003001 gggtaagctc tcacaccatt cagctcatag cattacattc ttcataatgc actggatggg 
003061 cttggtaaca tctattctaa ctaacgcagg accaaacaca gcttgttgtc gagaggcgag 
003121 aagagaggcc atcagtgatg aatgcttttg agttgatctc tacatctcag ggtctcaatc 
003181 ttggcacact ctttgaaaag caatcggtac gatcacattc ttaaattggt cattctgaag 
003241 tctgaactaa acatgttcaa gtacacttac agtcatgagt tataatctaa aatgctaaac 
003301 caattttctt tctactttta gcagggttct gtgaagcgag aaacaagatt tgcatcaagg 
003361 ctgcctgcaa acgagatatt gtcgaaaatt gaagcagctg ctggacccat gggctttaat 
003421 gtacagaagc gcaactacaa ggtaactaat ccaaaattcc acaacttgtt tctaccattt 
003481 ttatctgaaa caattaacat tctgatgaca cttttatgga ttggaatcag ctgaagttgc 
003541 aaggagagaa tccaggaagg aaaggtcagc ttgcaattgc aacagaggta caccaatgat 
003601 acaacatcac tatttactat gttctgtcat tctatatgct gtgcagcttg tgctactact 
003661 ctttcctggg tttatagact gaaatcagtt catccatttc taaaggtttt tgaagtcacg 
003721 ccctcgctgt acatggttga gctccgcaaa tctaacggcg acactcttga attccataag 
003781 gtacacataa cagtaaaatt actgcaggac ctcacagttc atacttcaga ctgggattcg 
003841 gctaactcat ggtgtaattt tttacgcgtt tcgcagttct accacaacat ctccaatggc 
003901 ctgaaagatg tgatgtggaa gccggagagt agcataatcg caggcgatga gatccagcat 
003961 cggaggtcac cgtgattggc agtttggcac caaaagttca gtgatagtat aaagtagata 
004021 accagccagg aaaacctact aaggaatggc ctgtggctgt tttttttttt ttggttcttt 
004081 ttacctttta agttgagtta ctatctaatc tagacatggt tgtaaacaaa gtttgtatgg 
004141 agatggaatg tgaatgaaga atgtgcatag ttttgcttcc ttgacttatt ttaaaagcag 
004201 taacctgtga aatccgatga atgaaattga aatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249963 FLbaf60d24 1932
more... (Total Hit Count: 16 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ687410 whrd10b18 679
more... (Total Hit Count: 60 )
/rice/oryzabase