Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK068311 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os07g0657900 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 7 |
| RAP - Location, Length | 28,354,862 - 28,359,320 ( + ) ; 4,459(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 28,354,862 - 28,355,025 ( + ) ; 164 (bp) |
| Exon 2 | Location | 28,355,170 - 28,355,383 ( + ) ; 214 (bp) |
| Exon 3 | Location | 28,355,475 - 28,355,580 ( + ) ; 106 (bp) |
| Exon 4 | Location | 28,356,012 - 28,356,277 ( + ) ; 266 (bp) |
| Exon 5 | Location | 28,356,915 - 28,357,217 ( + ) ; 303 (bp) |
| Exon 6 | Location | 28,357,453 - 28,357,560 ( + ) ; 108 (bp) |
| Exon 7 | Location | 28,358,013 - 28,358,099 ( + ) ; 87 (bp) |
| Exon 8 | Location | 28,358,185 - 28,358,289 ( + ) ; 105 (bp) |
| Exon 9 | Location | 28,358,732 - 28,358,862 ( + ) ; 131 (bp) |
| Exon 10 | Location | 28,358,986 - 28,359,320 ( + ) ; 335 (bp) |
| Related Rice IDs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os07g0657900 | Os07t0657900-01 | J013151L11 | 203926 | J013151L11 | 3585 | LOC_Os07g46410.1 | AK068311 | 20117 | Q70G58 | NTRC_ORYSJ |
Chromosome: 7 , position: 28,354,862 - 28,359,320 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 cgccgccctc tcggccgcgc cgccgtcctc ccgccgccgc agggccttct tccatcactc 000061 ctgccgcccg ctcccttcgt cggcggcggc ggcggccaag gcgttgcgcg cgtcggctgc 000121 ccccgccgtc gacgaggagg cccccgcatc cccgcctcca tcaggtgctc gcgccctcgc 000181 tctctattgc tccagatttt tttttagatt ggactgttcc gagtgttcag tccgcgccgt 000241 gcgagctcgc ttgcatttga tctgatgctg tccatggagc tgaagacgat gatttgctgt 000301 tcgtgcagat cttggcaagg gagtggagaa cttggtgatc ataggctctg gcccggcggg 000361 gtacactgcc gcgatttacg ccgctcgggc gaacctcaag cccgtcgtgt tcgaaggcta 000421 ccaggttggt ggcgttcctg gtgggcagct gatgaccacc accgaggtgg agaatttccc 000481 tgggtttccg gatggcgtca ctgggcctga tctcatggac aagtaaacat tgctcatttc 000541 ttcgcatgtt tttgagttta tctgttgtta atgttgtgtt cacttgctca tatcgggcca 000601 tggattaaat cagaatgcgg aagcaagcgg agcggtgggg tgctgagctt caccaggagg 000661 atgttgagtt tgtgaatgtg aagagcagac cgtttgttat tcgtagcagt gatcgtgagg 000721 ttagcatcat tgtgctcttc ctccttttcg agttatgaac tttccacttt tcacaaggtg 000781 tcattgttgg tttatggtaa tacaatgttc ttgacaatag cgattttcac aatgttcttg 000841 acaaaagtat tagtatgatt taaacaaaac tatcatccat ttaattaaga atataacaaa 000901 ggagagctgg tcaagttgtg tcgggaaagc atatcagtat acaattttta tatggtttac 000961 ttaattagct cttacaatat ttgcctagtc atgtgcttta gttctttagt tgtgctgtaa 001021 cttctctttc tataagtata atgaccagtt tgatatagca tatagcagtc gtctgttata 001081 attaatagtg cacagaacta ctttggacaa atgtttttgc tgcgctcatc ccagtgagtg 001141 tcctatacag gtgaaatgcc atagtgtaat cattgctact ggtgctgctg ctaagcgcct 001201 tcgattacct cgtgaagatg aattttggag tagaggtatc agtgcatgtg caatatgtga 001261 tggagcatcc ccactattta agggtcaagt tcttgcagtt gttggaggtg gtgatacagc 001321 tacagaggaa gctatatatt tgaccaaata tgcacgtcac gttcatttac ttgttcgaaa 001381 ggatcagcta cgagcatcca aagctatgca ggaccggtaa ggaactttca agtcctatcc 001441 ctagtaaatg tatatattta ccttcaagtg actactctgt tcatgtaaat atcttgccca 001501 tgaattgtta ggatctcact tgttttgtgc attcacattg ttaatagctt aaatgactca 001561 taacacagga ggattgcttt tctcttttca gctgtagtgt ttttttattt atttttataa 001621 cacatttacc ttttggatct ggcttacaag ggcatagtta tatgctgggc tacagctttc 001681 aaatggtgtt tacaattagc tcctgacatg gattaagcaa ccttgcagct tgactcactt 001741 ttagcatctc accaagttag acagtggaaa ttgtaaaatt ggtttatatt taggagaaac 001801 ctgaggacaa acactttggg cctgtttggc tgcacttaac tttcctgttg tgcagccaac 001861 acaaacagta agttgagtct gtagctgcag cagcaacggc tgcgcacagt ggctgtacca 001921 gccagccgaa cagggccttt ggaacttatc tgtatattaa tttgttatgt tctttgaagg 001981 atgtagcttg tcttcagttg cataaaatat taatgaggta aaattttcaa ttccctggat 002041 gtttggttaa caggttgatt atggcgaatg tttcagagta ctcaacaatc ccaacataac 002101 agtacatttc aatacagaag ctgtggatgt tgtcagcaat cccaaaggcc agatgtctgg 002161 tattcaactg aagagaaccg acacgggaga ggaatcagtt cttgaggtga aaggtctatt 002221 ctatggcata ggacacactc caaacagtca gttgttacaa ggtcaaattg atcttgacga 002281 tgctggttat attttggttg aagaaggcac agcaaaaaca tcagttgatg gtgtatttgc 002341 tgctggtgat gtgcaggtaa ctccatcctt cacttcatgt atataacttc tacatggctg 002401 taatgtgttt cattcttgaa atttgaatat aaccctgcca cagttcatat gtgccataat 002461 cattagcatg tcatgtcttg gtggtcttgt agcacaccag cacatcacgt cttcttttat 002521 tgaacactag ctggattgga atacaaatat gagtattcta gttttaatgc cttttcaatg 002581 tttatctgca ggatcatgaa tggaggcaag ccgttactgc agctggatcc ggatgtgtag 002641 ccgctttgtc ggtggaaaga tacttagttg ccaacgacct tcttgttgaa tttcaccagg 002701 tactatcttg tctgcagcat atatttcttt atggtgactg atgcttctgc gaacattatc 002761 tagctcaata tttgttgttc catggaggct agctgttcca ctgtcaaatt ttgtgcctat 002821 gattactggt acaccagaca ctgcagcaat ttctgctgtt gatctttttc ctctaatttt 002881 agggtttcta gttgccatat acagcaattc tgtgcagacc atgttgtgct tttatttcat 002941 gtataaaatt tgaggttgga ccttgtcagc atgtattggt attgttatgt gtaatcgaga 003001 atatatttat tctagaaatg tgaaaggatg aaactaaatc tatttgtcat tgtatatgta 003061 tcgatcaatg cacatttagc atttttaatt gaccatctct agcaaccggt caggcttaca 003121 agatacactt catcttttta ttaaattaca gcctgttcgc gaagaaaagg agaaggagat 003181 tacagataga gatgtcgaga tgggctttga catttctcac acaaagcata ggggacaggt 003241 acctaacaca tttgcttgta ctgtggcttc atattggtgc aaacatttat gtgaaaactg 003301 atttgagctt gcttcctttg cagtatgcac tccgcaaagt atatcatgaa agtccaaggc 003361 ttgtctgtgt tctatatact tctccaacat gtggtccttg cagaacctta aagccaattc 003421 taagcaaggt ttgttcttga aattgaaatt gggctctagt cgtcacaagt catcactcta 003481 gacaaataaa atgccttgat atacagctat ctgattggcc ctccagtcca tcgatcatta 003541 tgcattcata ttgacaggcc atgttaacgt tcatttctct gatctaccaa tatgaccaat 003601 caagttcatt tctctgatct acaatatcga atcattaaag aaaatccatt tcaaggtgct 003661 aactttgtga tgttcttgtg gtctggacaa cacaggtttt cagtgcttct tgataaacct 003721 tgtagaactg atatttatag ttgcttgact aacatttgat tgccgcacca ttctacagaa 003781 gttccgttct gttagtcatg cttgtgttag ttttgttgtt aacgttgcta gttgctactt 003841 ggcacttgct aatattgata tctttttcag gttatagatg agtacaacga acacgttcat 003901 tttgtcgaaa ttgacatcga ggaggatcct gaaatagcag aagctgcagg catcatggga 003961 acaccatgtg ttcaattttt taaaaataaa gaaatgctca ggttggctat cttggatttg 004021 tttatctgct actagtctat ataaacatca gtcacttcat tgctgcctaa ttaatatgat 004081 gcaatggaat cccttctgat cgtttttaac cttggactat gcaggactgt ctctggtgtt 004141 aaaatgaaga aggaatatag ggagtttatc gagtcaaaca aatgagctga acccaacata 004201 cgattcaaat tttaaagtgt aatagtcttc ttttgcccat actgactatt tctagctgcc 004261 accgtggtgg ccaatttttg gtcaaaaatt ttcagatggg ccgggtgtag tgcggttcaa 004321 gaggaaatta gccggtcgct cctattgaat tcaatcaatg taacagaata tattcttttg 004381 ctgtacaaca acgtattggt cgttgtcttg acaccgtgca aactcctccc tgacaatata 004441 tacgtcttaa agattttgg |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AV933905 | baald24 | 671 |
| more... (Total Hit Count: 26 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ667407 | whkv11b12 | 815 |
| more... (Total Hit Count: 17 ) | ||
