cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063406     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0566500 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 23,415,575 -  23,417,710  ( - );   2,136(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,415,575 -  23,416,747 ( - );   1,173 (bp)
Exon 2 Location 23,416,832 -  23,417,169 ( - );   338 (bp)
Exon 3 Location 23,417,405 -  23,417,710 ( - );   306 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os07g0566500 Os07t0566500-01 001115A08 106396 001115A08 12158 LOC_Os07g37920.1 AK063406 36446 AP008213.2 255677434 BAF21931.1 113611553 NC_008400.2 297607852 NM_001066552.1 115472836 NP_001060017.1 115472837


Chromosome: 7 ,  position: 23,415,575 - 23,417,710 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aactagctta gctagacagc gtgtgttggt ggtggtggtg gtgtgtgtgt gtgtgaggag 
000061 ggtgatcgat cgatcgagcg atggagagcc cggactcgtc gtccggctcg gcgccaccgc 
000121 gagtactacg gcggcaacag cagcagccgg gctcggcgcc ggagctgccg ccggggttcc 
000181 ggttccaccc gacggacgag gagctggtgg tgcactacct caagaagaag gccgcctccg 
000241 ttccgctccc cgtcaccatc atcgccgagg tcgatctcta caagttcgat ccctgggatc 
000301 tccccggtac gtaatttaat cacttacacc cataccaatc ataaattaag aatttattat 
000361 tacagcttat atatactatt atcatgcatg tatattatct aaaaaaaatc agcccaaatc 
000421 tccatatgca tgtgagcatg ctagcttgga tgtgtagtgc tcgatcgatc gatcgatcga 
000481 tcgatctggt gtcgtttact tgtttgtgcg atttatgcgt gcatgcatcg gtttgtatca 
000541 gagaaggcga acttcgggga gcaggagtgg tatttcttca gcccgaggga ccgcaagtac 
000601 ccgaacgggg cgcggccgaa ccgggcggcg acgtcggggt actggaaggc caccggcacc 
000661 gacaagccca tcatgtcgtc ggggagcacc cgcgagaagg tcggcgtgaa gaaggcgctc 
000721 gtgttctacc ggggcaagcc acccaagggc gtcaagacta actggatcat gcacgagtac 
000781 cgtctcacgg acacgtctag ctccgccgcc gccgtcgcta cgaccaggcg gccgccgccg 
000841 cccatcaccg gcggtagcaa gggcgccgtc tctctcaggg tacgtacgta tatacgtttg 
000901 tgcgtgacag tctcgcttgg agtcttggac tgattgatct gatcaagttg attagtgtct 
000961 cagctggatg actgggtgct gtgccgcata tacaagaaga cgaacaaggc cggtgcgggg 
001021 cagaggagca tggagtgcga ggactccgtg gaggacgcgg tggccgcgta cgcgccgtcg 
001081 tcgcagcagc atgccacggc tgctgctggc atggccggtt cggacggcgc cggaggagtt 
001141 gctgcagcgc acggcggcga ctacagttca ctgctccatc acgacagcca cgaggacacc 
001201 ttcctcgtaa acggcctgct caccgcggag gacgccgccg gcctctcgac cggcgccagc 
001261 tctctcagcc agctcgccgc ggcggcgagg gcggcggcga caccgtgcga cgccaccaag 
001321 cagcttcttg ctccgtctcc aaccccattc aactggttcg aggcattcct tccacgggcc 
001381 aaggagtttc ctagtgggct aagcaggagt agcagagaca tcggcgacat gtcgctgtca 
001441 tcgacggtgg acaggagcct gtctgaggct ggcgccgtgg ccattgacac cggcgacgcc 
001501 gccaatggcg caaacactat gcctgcattt atcaatcctc tcggcgtgca gggtgcaacc 
001561 taccaacaac accaagccat catgggtgcc tcgttgccat cggagtcagc agcagcagca 
001621 gccgcctgca atttccagca tccgttccaa ctctccaggg tgaattggga ttcctgaata 
001681 aaaggtgccg gcattatgca tacacatata tgcacatgca tacatgcatg gcttttcaag 
001741 tagtagcaca acattactag taattaatca cactaatgtg tgtggcagtc gcattcagtg 
001801 agcactgatc gagtagttgc atgaacacaa cactaatgca tgcactacat atatatggcc 
001861 gcattgctcc tagggcacgt acctgtacga actaggtaag tgacctaacc agctagatca 
001921 tgttcagaat aaggagaaga agccgcatgc aaacacgtag atcatatggc tttgccttca 
001981 catgcgtttg catcatatat atcgcattca gaaagtagtg ctgcagctaa cacatagata 
002041 tggtgttagc ttcatgcgtt tgtaccatat atagcggatg cagaaagtag ctagttgcac 
002101 tgttcatcat tatcccatga gatatgaact ttatat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ481756 bah61m05 500
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ654015 whgc15p21 677
more... (Total Hit Count: 4 )
/rice/oryzabase