cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK059906     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os07g0523600 ( IRGSP 1.0 )
RAP - Chromosome No. 7
RAP - Location, Length 20,955,774 -  20,957,724  ( - );   1,951(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 20,955,774 -  20,956,031 ( - );   258 (bp)
Exon 2 Location 20,956,139 -  20,956,352 ( - );   214 (bp)
Exon 3 Location 20,956,726 -  20,956,948 ( - );   223 (bp)
Exon 4 Location 20,957,225 -  20,957,450 ( - );   226 (bp)
Exon 5 Location 20,957,570 -  20,957,724 ( - );   155 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os07g0523600 Os07t0523600-01 101994 006208H08 5307 LOC_Os07g33954.1 AK059906 2017 AP008213.2 255677434 BAF21733.1 113611355 NC_008400.2 297607852 NM_001066354.1 115472440 NP_001059819.1 115472441
Os07g0523600 Os07t0523600-01 101994 006208H08 5307 LOC_Os07g34006.1 AK059906 2017 AP008213.2 255677434 BAF21733.1 113611355 NC_008400.2 297607852 NM_001066354.1 115472440 NP_001059819.1 115472441
Os07g0523965 Os07t0523965-01 006208H08 101994 006208H08 5307 AK059906 AP008213.2 255677434 BAF21733.1 113611355 NC_008400.2 297607852 NM_001066354.1 115472440 NP_001059819.1 115472441


Chromosome: 7 ,  position: 20,955,774 - 20,957,724 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tctacaacaa gaaggtgctc aacgcgttcc cttacccgtg gctcacgtcc acgctctccc 
000061 tcgccgccgg ctccgccatc atgctcgcct cctgggccac caggatcgcc gaggcgcccg 
000121 ccaccgacct cgatttctgg aaggccctgt ctccggtgag atcgcattga ccatggacac 
000181 catcgtctcc tccttcttga ttctgttcta ttctgaatct ctgacgcgtt cgttggattt 
000241 ggggattcgt ttttgctcgt tgtgggacga gcaggtggcg atcgcgcaca ccatcgggca 
000301 cgtggcggcg acggtgagca tggcgaaggt ggcggtgtcg ttcacccaca tcatcaagag 
000361 cggcgagccg gcgttcagcg tgctcgtctc caggttcttc ctcggcgagc acttcccggc 
000421 gccggtctac ttctccctcc tcccaatcat cggcggatgc gccctcgccg ccatcaccga 
000481 gctcaatttc aacatgattg gtgagtgagc aaacactctg catctctctg tctctccacc 
000541 tgaaatcctg gagatacttg cagcagatac accagaaata tcctcacttt ttgattaaaa 
000601 aaatagatat tatctccaag aattcttcag aacaagaact gtccattaac caaagatatg 
000661 ttttcttatg tcagataaag aaatatacac cagccacgaa aaagtgcaca atttgttcat 
000721 aaacctgaca catcacatca atctgttcat cgtgtattgc tgaaaattcg atgcaggatt 
000781 catgggggcg atgatctcga acctggcatt cgtgttccgg aacatattct ccaagaaggg 
000841 gatgaagggc aagtcggtga gcgggatgaa ctactacgcc tgcctctcca tgctctcgct 
000901 ggtcatcctc ctccctttcg ccttcgccat ggaggggccc aaggtgtggg ctgccggctg 
000961 gcaaaaagcc gtcgccgaga tcggtccaaa cttcgtctgg tgagcctcac atgcttttct 
001021 ttgtaccact tctcaccgtt tcactgtcac aaccatcacg tcagttgaga tttttgggta 
001081 tcaattgggc aaaaaatttc tagtgataag tgcttgacct aagctttcaa acagtttcag 
001141 catgcaacac tttgtacttt cagtaacatc actcaagtat tctatacaaa aagaaccatt 
001201 atcaattaat atagatatag gatcgtccta tcactatcat ttcctcctaa gcggcaatat 
001261 cttcttcagt tcattctgaa agagaaataa gaagtatcaa aagatttgat gatatttttg 
001321 tgtgataatc cagctgattc atgtggccat ggatttctct gtggttttgt aggtgggtgg 
001381 cggcgcagag tgtgttctac cacttgtaca accaagtgtc ctacatgtca ttggacgaga 
001441 tctcaccact gacattcagc atcggcaaca ccatgaagcg gatctccgtc attgtcgcct 
001501 ccatcatcat cttccacacg ccggtccagc ccatcaacgc cctcggagcc gccattgcga 
001561 ttctcggaac tttcatctac tctcaggtag attttccgca catgttttac caaatcacat 
001621 ttttcacaaa agagccaatt catgaacata agtctgaatc tctaaccaaa aaaaaaacat 
001681 ctcatttttt caggcgaagc agtaatggca taagcatgga aatggcaccc gttttcgcca 
001741 caagtcgcga ctcggtgctc gggatgtaac aatgctatga gcatatatcc aaggatccct 
001801 tgtaatatat tagatcttct tttcttttca tttttctttc tctaggtgta gctgccaatg 
001861 tttcttctga attcgtcgag ttcttgtact atgactatga tgatgtagag aggtggatct 
001921 gcctaaataa agctgttaga ttttttgctt g

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK249318 FLbaf24p07 912 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ629133 whcs18d05 818
more... (Total Hit Count: 18 )
/rice/oryzabase