cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK121630     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0298200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 11,138,175 -  11,144,689  ( - );   6,515(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,138,175 -  11,138,964 ( - );   790 (bp)
Exon 2 Location 11,139,512 -  11,139,813 ( - );   302 (bp)
Exon 3 Location 11,140,435 -  11,140,635 ( - );   201 (bp)
Exon 4 Location 11,141,864 -  11,142,546 ( - );   683 (bp)
Exon 5 Location 11,144,467 -  11,144,689 ( - );   223 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Os06g0298200 Os06t0298200-02 216349 J033050D14 227 LOC_Os06g19444.1 AK121630 27899
Os06g0298200 Os06t0298200-02 216349 J033050D14 227 LOC_Os06g19444.2 AK121630 27899


Chromosome: 6 ,  position: 11,138,175 - 11,144,689 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 tgttccctct ctctctcctc ttatccttct cttctccgtt tgcttcgctg ctgctgctgc 
000061 tgttctacgc gcgcgacacg gaagagagaa aagtggtttt ttattgggtt cctaagccct 
000121 ttttgtttcc agaggcttct ggattgatcg gttgatctct ctcccttccc ctctagggtt 
000181 tcctgggggt ggatctgagg agcggcggcg ctccttcgtc ccggtgcgtg atctctctct 
000241 ctctcaatct ccgttgaggc gttggtttcc ccgcttggat tctgcgaggt tggtagtgtt 
000301 tgcgtccgcg ggggtttgcg ctctggtttg gatttggacc gagttcgagt acttcggagc 
000361 cctttcctct gttgggattc gttggctttg gggtgttctg catgcatcgg tccttttacg 
000421 gaggatttgg ggggttttgt tctgtttctg gctggcttcg attttttact ggctgagtga 
000481 ttgctgcttc gtgtgtacta cggcgttgtt cgtgtggttg gatttgatat gggttaattt 
000541 tggtttggat ttcgtccggg gtcatgtaag tgagatttcg ggttaagttt gtgacgacag 
000601 ctctgaagtt tcttacaaga tgtttttttt aacagtaatc gacttttcta cgattggcta 
000661 tttttttccc ctttgtttca atcagaaaat aaatcttttc ccctttaaca aatgggcgaa 
000721 gcatgttttt gaattgaatt tgtgggactg tttttttatt cgatgaacta aaaaaagtta 
000781 tggatcttag gattgttttt ctttttttta ttcttcgtat gttgtcacta aataaaaaaa 
000841 tttcagcttt tttctattgt gaaatatatt gtcaatatgt tcttgctttt tttttcgtac 
000901 tatggtctaa gaaactggag ttaaaatgaa agagaactcg gtctttgact aattctacaa 
000961 ttttttaatg ggacatcttt tctacatctt aaattccatc gttttcataa aattttcttt 
001021 cgtgcagctt tttttttctt gcttgccata gctattaaaa tctttagttc ctttttttta 
001081 atctttatcc agacatagct tgcctagatg caaaagttgt gtgttttgct atgcccgcct 
001141 aaaataacat ttattttgcc atgtcatcaa acatttttct ttctgccaat cctgcatgtc 
001201 catgaaaaca tttcttaata ggcttcctta ccctactttt tactggagta ctagtactca 
001261 agactgcaat tttttcttca ccttttcgtt tacctttata aggctttttt tctcccctga 
001321 tgctatgatt ttatcctgca aattgaccct tcttttggtt ttataaaaaa gactaggata 
001381 gctccgtctt tctttgctta tatcgttatt tcagcctctt ctgttagata tatttccccc 
001441 ctatttcgag tgttcaacta atgcggcttg tcgttcgttg cttggagaaa ttgtgataaa 
001501 atatactatt ttcataatga aaccgataat tgtcgttgac tcgtaatgta gttattttgg 
001561 ttcttgtgat aattttctac atctctcttt ttcccttgca aacttagtac ctatgggaat 
001621 gggaatatat gctagaagca atgagtgagg tgctggaatt atataatatg tgccaagagc 
001681 aggagattcc aaagactagt tgctgatact tttgtagtgg gatttcgatt ttttatgctt 
001741 cggttggcaa atgggggcgg agtccacaga ttaatgagtc cgttgaaacc taaagtagat 
001801 ggcggtaata tgtcctaatt aggaaatata tctacattat cctttagatt atattattga 
001861 tagctgatgc aagacgacgc tgagtggaac atacttgttg ctacctgttt tgaacatttc 
001921 tcttggtttg aatgaaaact gaaaaggatg gctacctagg gtcctaggtc atagcaactg 
001981 aaacagtaaa aaatataaaa tctatgttct catgtaggtg gatgcccata aatgtatgaa 
002041 tattcattta tgaatactct acggttttcc aatagtatgt gggaatattt ttttatgtgc 
002101 tggtactaat gttttctaat aactgtttgt tgatactgta caggtttatg taaatctgat 
002161 cgatccagaa agtttgtgaa aaaagagtgt ggcacatacc taaagctggc ttaaagtttg 
002221 cccatagcta atatcatggg cgctctttgt gatttctgcg gggagcagag gtctatggtt 
002281 tattgccgat cagatgcagc atccttgtgc ttatcgtgtg accgtaatgt gcattcagct 
002341 aatgctcttt ctcggcgcca tacaaggaca cttctgtgtg atagatgtgc ttcacagcct 
002401 gccatggtcc gctgccttgt agaaaatgcc tcgctttgcc aaaattgtga ttggaatggg 
002461 catagtgctg ggtcttcagc tgctggtcat aagaggcaga ccataaactg ctactcaggg 
002521 tgcccatcat cttcagaact ttcaaaaatc tggacatttg tttcggatat tcctaatgta 
002581 gctcctgagc cgaattgcga gcaagggata agcatgatga gcatcagcga cagtggtgtc 
002641 agtaatcaag acaatgctgc aggggacagc agtttgttag atattgctag tgcaaccctt 
002701 atgagtgatc ttggcactgc tggcaagcca aagtctttga taggctcctc atctgaagct 
002761 ggcgtgaacc ttcttccact tgctactgat cagatggctg gatccgtgga ttcgacatca 
002821 gctaaggtgc tataaggctt tcacacattc ctccatacat agatttacta attcgcctca 
002881 attcacctct gccgctgcat atactaccca tatcccatgg atgtaagata atcgactgtt 
002941 ttcctcccta cagttggcca ttatcatttg tttactctac catatatgcc atgattttct 
003001 ttttctgtgt gtactctatt ttgaatgcat attgtaagtg agttcactta aatttctata 
003061 caagaaaaag aaataatcta actgttaatg atgcataagc ataagcttgt caatgattac 
003121 tttaccatat gtcatggatt ttttctgtgt actccgtttt gaatggatat tgcaagtgag 
003181 ttcagttaaa tgtctatacc aaaaaaaact gttaattgtg cataagcata agcttatcgg 
003241 ggtagtggat ggtgcatgga ggttcaatag gctagcagaa gttgctgaaa ctgtatacat 
003301 gcatgtgcaa tgagatatga acattatgat gtgtatggac tacaatctgg atccactcag 
003361 cagatatgaa tagatgaaac agggtaataa cagaatatgg agtatagaaa atgtctatat 
003421 tacagaaata gttataggac tatcgagagg tttagacagg tggataacta tggtgcttat 
003481 gttcttatgt caagtcttgt cttccaagtg ttctgtgacc tcatgcagat ctacaaatgc 
003541 atattctcac aacattaaaa tttggtacaa gtaatctttt aaaattattc cttcacaatt 
003601 tctttggaaa atgttaagaa cactgctttg tattatttgg atgatgtagc atttcacatt 
003661 ttagtctatc tcgtattcta atttatctta ctggaccata gattcccatg acaggttatt 
003721 tgtgtggaga actttaaaga ttctatacag agagaattta ctttcgtctt tcttcaaatc 
003781 actttctctg tacagcattt gcaaattttc aggccgtttt acttcaatct tccactacac 
003841 catgtttctt ttttagagag cataagacac acacacacac acacacaaac acattcttcc 
003901 acatacattc acaccgtgtg tgcgtgtaag caccctatgc acacacaagg cttcacccag 
003961 gacatgcttt ctctcttaat ccacacgtgt gcatgctcca tgcttcttca aaattagttt 
004021 gtcactaatc tgtgtttatg gtctccttat gcaggtgccc tatacggcag accaagatat 
004081 gttcagcaaa gacagtatat atgaagattt ctgtgtggac gatgttgatc ttagtttcga 
004141 aaattatgag gaactatttg gcacctccca tattcaaaca gagcaactgt ttgatgatgc 
004201 tgggatcgac agttactttg aatcgaagga aataccttct ggaaactctg atgaggtttg 
004261 tagtttactc ttaatggttc ctttttaaga agtaagcttc aattccacag taacattcat 
004321 ttgtaggttt tctcgcaact cctgatcttc tttgtttcac caattcaact tgccctgcac 
004381 atctttattg cttgcaggct tttctcttgg ttcgatttct cagatatatg ttatttattt 
004441 gacctggttt gagtcaaatt tatctttcat taaagataaa ttattaggtg ttaaatctct 
004501 gtacaagagg agtcagcatt tggattaata attaaattac tctcgtctct cccaagttta 
004561 tcatttcagt ccatggtctc atccttctct tagatccctc ccctttagtt gttccttccc 
004621 tgctctcctt ggaactgata tattcgcagc tcccatgttc aagaagcaaa agatggaagt 
004681 tcttaattag tgtttctggt ctttgtgttt atgaaacaaa caaaactatg actgaaaatg 
004741 gtaatcagta tacattctca aatgcagcag ttcatttgta atccatttgt ttggaaattc 
004801 atgttgtatt tagttttgtc tggggcttat tggagttaac tttcagcatt tatattcatt 
004861 attatctttt cagcagccca agctgatgca gccagtgacc agcaatgcag tatctgctga 
004921 ttcagggatg tcgatcccag gagccaaagg tgattccagt ctttgtatac ctgtgaggca 
004981 agctaggtcc agtatctctc tttcattttc tggtttgact ggtgagagca gtgctggaga 
005041 ttaccaagat tgtggggtat caccagtgct ccttatgggt gagcctcctt ggcatcctcc 
005101 tggccctgag gggtcatttg ctggagctac cagagacgat gctatcacac gatacaagga 
005161 gaagaagaag agaagaaagt aagtgcattt cttactaatt tcgctactca tttgcttaaa 
005221 catttatgct gtataaccac gtaagaattc tataataaat ttgtggctgc aaaagaactc 
005281 aaagagaaat tgtagcttgt aaacttttcg gcacaacctc tactttacac atttggtaaa 
005341 gagtgcttgt atcgttgagt ttcatgaaag aagacacatg gaagtagttt tcatggaagt 
005401 taaattttga gtttttggaa acatcagttt ttgttaccct agttttacag taggtagaag 
005461 taaaattacc ttaactctgt atctttttac ttacaccaaa aatgtttttg gtaggtaact 
005521 gcatcacata aaaacatgct gaagattttc tgcttgaaga taacttattg ctaccttttc 
005581 attcagagag ctaataactt cttgtttctt gccttctctt ctaatatgtc agtccactga 
005641 tgctaacatg ctatatttct agcataccaa ttgcctcctt tttgacagct agctgattat 
005701 cttttctcat ggcttctctt gacagatttg acaagaaaat caggtatgca tctcgcaagg 
005761 ctagggcaga tgtgagaaaa agagtcaagg gccggtttgt taaggctggt gaagcatacg 
005821 actacgatcc actctgtgaa acgaggagct actgaacaca ataaaacatt atccaagtgt 
005881 taggttagca agcatcaacc aatgcttgtt gtggctggca ggaaggcact catactacaa 
005941 acaatgtggc aggcctgcct ctaaaaacaa caaaaaaaac agagcaatca aggggacaaa 
006001 aaggacaaaa agatttgaat ttgggaaatt tttcagatgc taccccctcc tttttcttct 
006061 gtacagtgga gggaatttgc atctttctgt tgctttcggg aggagcgatt tgagtcgctg 
006121 cccacctttt gtgaattaat cttgatacag ctgaacaaac ttcacttgca tttttatctc 
006181 ctttctacta accagagcat ccacctaccc ttgctgtggt gtttttggtg gtatgcttcc 
006241 agattggact attagcaaga caaggatgga tgtagtcgtg aaatcttctg ctgctctatt 
006301 tattgttatg taaaatctgc tgtaatccgg agtttattct gcaactctgc atgtgtaaat 
006361 accagatcag aataaactgg tagatgtaaa gttttcttta ttttctcaag tcgatgacat 
006421 tggaacccat gtaaccggcc accaactttt ttgtttcact atgctcaaat attcgaaaac 
006481 ttcagactgg cttaatgcta ttatttgtac taagc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK253130 FLbaf114k16 2307
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ905872 whthkles39d08 741
more... (Total Hit Count: 19 )
/rice/oryzabase