cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119632     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0728700 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 31,902,974 -  31,905,986  ( - );   3,013(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 31,902,974 -  31,903,929 ( - );   956 (bp)
Exon 2 Location 31,904,022 -  31,904,387 ( - );   366 (bp)
Exon 3 Location 31,904,563 -  31,904,624 ( - );   62 (bp)
Exon 4 Location 31,904,729 -  31,904,840 ( - );   112 (bp)
Exon 5 Location 31,904,977 -  31,905,114 ( - );   138 (bp)
Exon 6 Location 31,905,691 -  31,905,986 ( - );   296 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0728700 Os06t0728700-01 114815 002130E11 3135 LOC_Os06g51260.1 AK119632 15301 AK119632.1 37989255 BAG99721.1 215767493 NC_008399.2 297606578 NM_001065180.1 115470091 NP_001058645.1 115470092
Os06g0728700 Os06t0728700-01 114815 002130E11 3135 LOC_Os06g51260.2 AK119632 15301 AK119632.1 37989255 BAG99721.1 215767493 NC_008399.2 297606578 NM_001065180.1 115470091 NP_001058645.1 115470092


Chromosome: 6 ,  position: 31,902,974 - 31,905,986 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agtttcctct tcctctcgca tcctagcggc agcggcagcg gcagcctcct cctcctccgc 
000061 cgccgccgct cctcttccct ctcccaactc ccgtacgggc gtacggccgc ctcgtcgccg 
000121 gatttttttt ttcgttcccc cggcgagctt gcactctctt ttcttcgatt ctctttcggc 
000181 tttgcttctt cggtcgcttt tttttttggc tgttcctggt cgatcccggc gaaggaggtg 
000241 gtcgggaagc aagatttgaa ctactcctcc tcatggcttc catgccgcag ctggaggtaa 
000301 agatctcctc atatatagcc aggttgctct tctttttctt tttctggcct tgcgcaaccg 
000361 ctgatagaga gtttgatgat gatttgtgtg gtcatttgct taactttgca gattttattt 
000421 gcaaaaatat atttttcctg gaccgatcca ttattattgc ctaaaaaaac aaatgtattg 
000481 caatttttta gttaaaaaat gggagtgttc tagatgcttc tctcctggtt ctggggcgga 
000541 tacacgtcat aattatctat ctttagaggc ttccagaacg acatgggatg gccaatactc 
000601 ctcctatact ctctctctcc aataacggca cgaatcctca attaacaaat ccttctgcct 
000661 ctgcttactg gagtactaca ctacactagg tagcaattct gtttctacta ctacttttta 
000721 ctagtaatta tccctccctt tgcagcggta agtggtacta gtaactacgg agttgttgtt 
000781 gtaaactgtc tgcggcaatt gcaaattata cgagtacttg tgtatgcttt tgctaaagca 
000841 ctgaactttg tgttcctctc ctggccatct aggaaaagga ttcatccgat ttggcaatca 
000901 acaaaggccc gtcgctggat cttgtcaaat ctcccttgat gatgaatgat gcatctgcaa 
000961 ctgtaactgc aatgcagccc aacgagggga tggaggagtt ccctgtcaag gtacttttga 
001021 catctatgca agccgatcct tcttcactag catgtcttac tggcagagag gaacagaaaa 
001081 aattgtactt ctagcttaca gcgttgtcac tgtacctaac aatctccaac ccaatgtttg 
001141 aagcaggttc ggaagcctta cacgatcacc aagcagcggg agaagtggac ggaagaagag 
001201 cacgacaagt tccttgaggc attgaagctg tatggtcgct cttggcgtca gatacaaggt 
001261 gcgttttggc ctctctctct ctctcttcat atttttgcct tacattaggc tttaaacaag 
001321 ttcagtgagt agtatgtctg atttgtccaa gctgttctct agagcacatt ggcacaaaga 
001381 ctgctgtcca aattcggagc catgcccaga agtttttctc aaaggtgata taataatcct 
001441 tcatgtacca attgatcaat ctgattgatt tattactaca ctgccgatgc tatatttttc 
001501 tctatatata tattacatgt gcttgtaaag cagaattggt aacagtaaac ttgaaatggc 
001561 atgctcaaac gtttctaatg cgggggcttt atttagcagg tggtgcgtga gcccggttcc 
001621 aataatgcga ttgagatccc tccacctagg ccaaagagaa aaccacttca tccgtaccct 
001681 cgaaagtgtg cgaattctgg atcggacgca aatccagcaa cagcgcaatt gaagcttgct 
001741 cctggctcat cttcatctgg ctctgatcaa gagaatggtt ctcctatatc ggtgctatct 
001801 gcgatgcagt cagatgcttt tggatcgtca gtatccaatc catcaaccag atgtacctcc 
001861 ccagcgtcat ctgacgatgg aaataacatt cccacattca cgagtgggga agataataat 
001921 gtgccttgtg aaccaacagt gatagatccg tcccagtccc acaaggtaaa catccatcct 
001981 tcgaatgaat ctttttgtca aacatggtaa atcgccactt catcagctta ttagggttat 
002041 acatgtttct gtcacaggaa atagaccaag atagaaaaga cgtgaataat atgtctgaag 
002101 aggattcttc agaagaagag gtgcaagaaa caagcttgaa gctatttggg aggacagttg 
002161 tcatcccaga tccaaggaag agaagctcct cagatccgaa gcatgaaagt gaggagcaga 
002221 tatcacagcc ttccaatgaa gaaatgttgc aggcttcttc atcggttggg gagattccag 
002281 cggcatattg tgcaccaaat ggttggttta tgtcatacaa ttctttccca ttccaattcg 
002341 gtgaatcagc ggcagatgct agaattcccc ctttacacgt gtggtggcct tactacggtt 
002401 ttgctcccat tagccatcct agaggactaa gcacagtgat gcagcagact gaaggtagtg 
002461 acgagagtga cggtgtgaag agccactcat ccgaatcaag ttcggactcc ggggaaaatg 
002521 tgcagatgac cgctccccag agctcgagaa tagtggaatc acttggagcg atttacgtcc 
002581 gagactcagg ttcaagtttt gagctaaaac cgagcgcaaa ttcagcgttt gtaagagtga 
002641 agccaagcaa cagcggagat gaagaggtaa taaggggatt tgtgccttat aaaagatgca 
002701 aatttcaata acgcaggcaa gcgggtattt tcttgaaagc tgctaattta acagagaaga 
002761 gtaggagcac gaacgttgct tgcatcactg tatttttttt tgtttgtttg cggggattgg 
002821 tggtgcatta atgaattgtt tgctgcttgc accttaaaaa ggatagagat ggtgtaagca 
002881 gtttgttgct gtaagaatgt tacatgtaga ctagtactta aaattatagg ggatgccaat 
002941 ctctgccctg atgatgttgt aaaagcagta cgcaccatgt tttacctctg gttgaaagct 
003001 aagctgttaa tgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ469995 baal14l14 391
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ874547 whthls16c05 622
more... (Total Hit Count: 2 )
/rice/oryzabase