cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119521     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0175800 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 3,822,022 -  3,826,327  ( + ) ;   4,306(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,822,022 -  3,822,327 ( + ) ;   306 (bp)
Exon 2 Location 3,822,417 -  3,822,529 ( + ) ;   113 (bp)
Exon 3 Location 3,823,682 -  3,823,752 ( + ) ;   71 (bp)
Exon 4 Location 3,823,840 -  3,823,931 ( + ) ;   92 (bp)
Exon 5 Location 3,824,033 -  3,824,120 ( + ) ;   88 (bp)
Exon 6 Location 3,824,217 -  3,824,328 ( + ) ;   112 (bp)
Exon 7 Location 3,824,456 -  3,824,552 ( + ) ;   97 (bp)
Exon 8 Location 3,824,663 -  3,824,744 ( + ) ;   82 (bp)
Exon 9 Location 3,825,109 -  3,825,226 ( + ) ;   118 (bp)
Exon 10 Location 3,825,412 -  3,825,519 ( + ) ;   108 (bp)
Exon 11 Location 3,825,670 -  3,825,772 ( + ) ;   103 (bp)
Exon 12 Location 3,825,949 -  3,826,327 ( + ) ;   379 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0175800 Os06t0175800-01 114704 001202D09 21598 LOC_Os06g07860.1 AK119521 19852 AP008212.2 255676632 BAF18865.1 113594991 NC_008399.2 297606578 NM_001063486.1 115466703 NP_001056951.1 115466704
Os06g0175800 Os06t0175800-01 114704 001202D09 21598 LOC_Os06g07960.1 AK119521 19852 AP008212.2 255676632 BAF18865.1 113594991 NC_008399.2 297606578 NM_001063486.1 115466703 NP_001056951.1 115466704


Chromosome: 6 ,  position: 3,822,022 - 3,826,327 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaacaaaatc cactcccgct tccgacacat cgccaaccat gagcgccgcc gccgccgccg 
000061 ccgccgccgc cgcaatcccc acctctctcg gccgcctctt ccacctccgc cccaccccga 
000121 acccctcccg gaaccttagc ggcagctcag cgcaacccct cctccgcctc agctaccacc 
000181 cacgcctcac gctctctcgc cgcatggagg cgccggcggc gatcgccgac tcccacggcg 
000241 gcggcgacct gagcgcgtcc gcggtcggcg cggaggcgct gggcgccgtc gccgctccgg 
000301 atttcggtgg gtttgtgggg ggattttgtg ggatttgggg tttttgttgt ggttttggtg 
000361 gaactgatga gtggtgattg cttttggggg tgtagatgtg gagatgaagg agcctagcgt 
000421 ggcgacgata ctgacgagct tcgagaactc gttcgatggg ttcgggtcta tgagcacgcc 
000481 gctgtaccag acggccacgt ttaagcaggt aattagggat agaaatggtg gcagccagtg 
000541 aggattatac ctccgcaact gttctgtcaa tgtagtgata cacttacaat tgctgttttg 
000601 taatcgcatt gcttggctgt acggttgctt ggtatgcatg ttaatgcttg tgatgaggtt 
000661 gcggtaatgt cttttttttt tcgtgaacat gcaaaaagga ttgcacgtca atatattaga 
000721 cgaagagttg cggtaatgtc tgaatagctg atgattcgta ttaggtggtg tgtaaggatt 
000781 caacatttta ggattctagt tttcattttg aaatgtttgg agaaggatat ggatagtcag 
000841 tcaggcagtt atggggaaat tggcagcagg caactgtttt gaacttatct attttggaag 
000901 acaaatccaa tttcgtggaa atgtgaatag ttcaatgcac ctatttgttg atgtgtgcga 
000961 atgctggcca tacaaaattg gttttctgat tttgtagttt tttagaccct ttgagtccgt 
001021 tgtaattatc aaattacggc atcttgattt gtttattgtg ccattttgtc ctggctgtcc 
001081 ttaagcatac cactgtaatg caactattga atgtttggat agataatcac atgaactagt 
001141 ggattttccc gcgcaaattg cgcagagcta gatttcagaa gcaaaatagg atccaatatg 
001201 caaattttag cttctatttc tattgacacc attgtacttt atatacaata gattttaaag 
001261 atagaattct atttctttct atagatataa ttgttcttaa tacaattata tcaatcaatc 
001321 tccactgtta tgatttggac ccaccatgat ctaacagtgt aaatattttt ctttttctcc 
001381 gtttaatgtg ttaatttttg ggcctccaaa atgaacgtgg tgctttcttt tttatctttc 
001441 ttgataatgt aaatgattct taattgatct aatgatctct attctctagt tatacaagaa 
001501 tcatgacatg cagctaagaa tgataaaaag tgtgggaata tctgcaattc aatttggttg 
001561 tgaagaacta aattatacct tttaagttta tggtggttca taatttgcac tttgtcttgt 
001621 ctatttccaa gtacacttac tcctgcaagt taatttgcag ccttcagcaa ccgataatgg 
001681 accttatgat tacactagaa gtggtaaccc tacacgtgat gttctccaaa ggttaggtca 
001741 atttctcatc cgttttttac tctgtggtga aaaaaaatgc atttcttgat tgtttcatga 
001801 ttttgaggac atattcagcc ttatggctaa gcttgagaag gcggatcagg cattctgctt 
001861 caccagtggg atggcagcac tagctgcagt aacacacctc cttaagtctg gtattgttat 
001921 gttttttgct gttccatatt tctcatgttc ttgccatgga atcctgtatg catttgtgaa 
001981 tataattatt tgtcaaacct atgattctca ggacaagaaa tagttgctgg agaggacata 
002041 tatggtggct cagaccgtct gctctcacaa gttgccccga gacatgggat tgtagtaaag 
002101 ttagtgttat ctccatattt ttagtaagat tatattttgt tgttgcctct ttattctcac 
002161 ttacaagcgt tatatgattt tttttcttgt gacagacgaa ttgatacaac caaaattagt 
002221 gaggtaactt ctgcaattgg gcccttgact aaactagtat ggcttgaaag tcccaccaat 
002281 ccccgtctac aaattactga tataaaggta agatttggtc gatgtatgtg gtggtcatga 
002341 agcgtatatc tagattttta tttcatccag atgtttttcg ccttggtttt aaggtagtat 
002401 tcttattcct tccactgttt ttgttgcttc acagaaaata gcagagatag ctcattacca 
002461 tggtgctctt gttttagtag acaacagcat catgtctcct gtgctctccc gtcctctaga 
002521 acttggagca ggtatataat tgtatattta cttatctaga acaacaggtt tccatttcaa 
002581 gcatccttgc atccccatag gacaacagag tttcatctat aattctcttg ttcctctgca 
002641 gatattgtta tgcactcagc aaccaaattt atagctggac atagcgatct tatggctgga 
002701 attcttgcgg tgaagggtga aaggtgtgct ctaaattctt cattcaacga ttatattgac 
002761 tcttttgcaa tttctccatt tcatctatcc catttcatgt ctataagctg ttcaatatta 
002821 tgttggtgtc tggtggcaaa cagtacttca gttctcacta ccctcctttt ctacttttct 
002881 tgaaatggac ctcactttac acttctccta tctattgctg gtggcatgaa taggcatgaa 
002941 tatccagggt ggatgctaat gggcaattcc tttctctttt gtttttcttg ctgaatacat 
003001 ctactcaata ttccttgaag ttggtagact tttaaaaatt gaagctgatg gaaactgtga 
003061 tgtaatacct gtttcatttg tcagcagctt ggctaaagag attgcatttc tacaaaatgc 
003121 tgaaggatca ggtttggcac catttgattg ctggctttgt ttgagaggaa tcaaaaccat 
003181 ggctttgcgg gtggagaagc agcaggtgta acttctttca tgtgccataa catgtatttc 
003241 aatatacata tcgagtatca acaaaattta taagactttg tagtctgcct tctgttaatt 
003301 atatttctgt ttccaaaatc cttatgttta catatgcatt aatgtgatct attcaactga 
003361 agagacggac cacccctata ttattggcag gctaatgctc agaagattgc tgaatttcta 
003421 gcttctcatc caagagtaaa gaaagtgaac tatgcaggac ttcctgatca tcctggacga 
003481 tctctacact attcccaggt tgttttttgg agtagttttc aaattgcctt acattaagtg 
003541 gctttagata gttatctatt taggatattt ccttggattg acatcttgga actggattca 
003601 gaacatccta ataacttttg attgtaacat ttccctttcc ttttgcaggc aaagggagcg 
003661 ggttcagttc tcagtttcct aactggttca ttagctctct caaaacatgt tgttgagacc 
003721 acaaagtact tcaatgtaac agttagcttt ggtgagcatt cagacaaacc catatttctg 
003781 cttctctcaa tgttctgctg tcatacatca tcaggagtca ttgtttttaa gaaaccatga 
003841 tgaaactgcg ccaatataac cgatccagtc atttcttatc aaagttttca gttcctgctt 
003901 gctaatccaa attaaaacta aatgcaggaa gtgtgaaatc gctcattagc ctgccatgct 
003961 tcatgtcaca cgccagcatc ccttctgcgg ttcgcgagga gcgcggcctg acagacgatc 
004021 tagtcaggat atcggttgga attgaggatg ccgacgacct catagcggat cttgatcatg 
004081 ctctccggtc tggtccagct tagagcctgt gaattctgtg cccttcctgt tcgttaggga 
004141 tgtagatgtg gtcatgtggg tgctatctgt gtgggtgatt gattcattgg tcaactcaat 
004201 aagctgctgt gtcatcgagg gaataaagac aatctatccc aaatttttta acaccatatg 
004261 gtgaccaact gaccatgata tggtcttaat caattgatat ttatag

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY850269 bast18g07 427 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ942783 whchan5h01 804
more... (Total Hit Count: 3 )
/rice/oryzabase