cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119314     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0613400 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 25,393,545 -  25,396,259  ( + ) ;   2,715(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,393,545 -  25,393,768 ( + ) ;   224 (bp)
Exon 2 Location 25,393,955 -  25,394,929 ( + ) ;   975 (bp)
Exon 3 Location 25,395,240 -  25,396,259 ( + ) ;   1,020 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0613400 Os06t0613400-01 001130G11 114497 001130G11 21484 LOC_Os06g41050.1 AK119314 3320 AP008212.2 255676632 BAF19984.1 113596110 NC_008399.2 297606578 NM_001064605.1 115468941 NP_001058070.1 115468942


Chromosome: 6 ,  position: 25,393,545 - 25,396,259 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gaaaagcttt ctcccccatt tcaagcggcg cgaacggcgg cggcggccgg cgaggagggc 
000061 gacggctagg gtttttctct ctctccgccg ccgaaatcga atccccgagg tgagctccat 
000121 ctcataccca ccgagtctca ccgtcccgac ccatctcctt cacccgccgc cgccgcctgc 
000181 gctgccccgc cgatcaccgt gagctgctgc agcttccgcc tccggtgagc acccgttgcc 
000241 gacggacatc gtcttccttc ctcatccatc tcgttctacc cgctccattc ctcgaattcg 
000301 cattagcctt catcttctct tctggatctg gaagcttttc tgttcgtctt aaccctagta 
000361 ctaattacag ttttttttac ccaaaatttt ttttggtgcc ctggctgtag agatgaatgc 
000421 gaatgtgttg ggcggcgatg tggtggcgga cgatttcaac tacttctccg gtgtgagcac 
000481 catctttgtg gccaacatcc aggaggtgaa ggaccgggtt tcccagatcg agctcctctt 
000541 ctgcagccag ctcttccctc atgtccaggc catgtggaag gcggccaagg atgcgtggat 
000601 ggagagggag gccgccctat tgagccaatt ggaggagctg agcagcggga agcggcacgc 
000661 ggaggagaag gcgctgcagc tggggtgctc ccttgatgag atgaagggga agcttgcgga 
000721 tgccgagcga tcggtcgcgg ggcatgaggt tgagaagaag cggcttctgg ggagattgga 
000781 ggaggaaatt gggaacaaag atgaggttat tcgccggcta gagagggaga ttgcggagaa 
000841 ggctgctgat ttttccaggg agagagatgc ccatcagagg cttttgcagc tggttgagtt 
000901 gaaggacaag aatttgcttc tcgagcagaa taaacggagg gatgcggagg agatggcact 
000961 gcagctgggg aactctcttg aggatatgaa ggggaacttt gagcgattga tcgcgaggca 
001021 tgaggttgag aaggagcgaa ttccggggag gttggaggag gaaatgggga aaaaggatga 
001081 ggttattggg cggctagaga gcgagattgc ggagaaggct gctgatgtct ctagggaaag 
001141 agatgcccat cagaggatgc tgcagcaggt tgagttgaag gataaggatc tgcttctcga 
001201 gcagaataag cggaaggacc tgatcgagga ttacactaag ctgaagacac tctacaagga 
001261 tttgaagtct cagtacaact ttcttgttgg aaagattggc cagaatgaag gctccaagtc 
001321 tcctgtagtc aatgtggtgg atcggaaaac ctccggaagc cctccaagca agagaaagct 
001381 caaaggtact cctgcccttt gatttccttt cattcagtag agctatttaa accttgttaa 
001441 tcaatcacca tttttattct ctaattactg ttacctggaa gtttcatttg aagaatacca 
001501 agttttaatt gcaattgtgt actataatcc atggtgctct gatcaatgcc gcggttgaaa 
001561 gtattattaa gcacctttgt aatctgcaag taatgtcctg ccaatgctat catattagca 
001621 ctaagatcta tgcctcctaa atcgatactg attgatgtct gccttagcat tttcttttac 
001681 ttgcttgatt ttcagatctg gtggacacta aaaaggagaa caatcaggca gtatctaaga 
001741 ctgtagatga gaaaaatggt cctgcttcaa gtgcaaaggc acaaggtacc caccatgcta 
001801 gctcagtcag gagttcattc agtaactcgc gcctttgtct accgtctcgt acaaccaatc 
001861 ctccaccaaa gaatgctact agcaattcaa aaacagaggc agcatctagt ttcacccgcc 
001921 caagtctaca ctggagggag actcgcgcgc gtaaagaacc aggcgttgta gatccacatg 
001981 atgatttcct tgacacacct ctggaggctg tcaaaaatat gatcaggaat cctaaaacgc 
002041 cagaagaagc acaagccctt gctgcctctc ctcctaaaga tatggacttc aataactctg 
002101 atgatgagac tcaagatgtc aatattgcca cccagggcca gaaaaacatg ccagttccca 
002161 agcagcaaag tacaatttca atccaaccac caaataaagg tttcaaatac acagaacctg 
002221 taagaaaaaa ggctgaccgg gagaatctga aaggcgttga gtgcaagcag tgcaagaaat 
002281 tctatgatgc tgttcttcca gatggccgca caaatggtga cggtgtggac tctacaagca 
002341 tgaggtgtga gcatcatgat ggcgtatcca gacatcgcta caggtacgcg ccgccgctga 
002401 cacctgaagg gttttggaac attgggtttg aatcagaaat gtagcacatg aagtatgatg 
002461 cgctcttcat tgattagtgc agtgtcgtgc cctaacatag gttctcagtc accccccaga 
002521 tactgttaat aatgtcagta gtaaatctca tgctggggaa atgatcattt ctttttttaa 
002581 gattatatgt ttggatagaa tgccaatttg ttgaagatag aatgtactta ctgtcacatc 
002641 gattctatgt aaatgacatc tgacattgaa aagcagtcga ataatcttga ataacaagcg 
002701 ttataacgtt acttg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252422 FLbaf152e02 1222 view details
/rice/oryzabase