cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK111691     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0154500 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 2,805,559 -  2,811,925  ( - );   6,367(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2,805,559 -  2,806,177 ( - );   619 (bp)
Exon 2 Location 2,806,791 -  2,806,971 ( - );   181 (bp)
Exon 3 Location 2,807,303 -  2,807,635 ( - );   333 (bp)
Exon 4 Location 2,808,695 -  2,808,832 ( - );   138 (bp)
Exon 5 Location 2,811,390 -  2,811,519 ( - );   130 (bp)
Exon 6 Location 2,811,607 -  2,811,925 ( - );   319 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os06g0154500 Os06t0154500-02 204729 J023007A05 4268 LOC_Os06g06090.1 AK111691 19870 AP008212.2 255676632 BAF18760.1 113594886 NC_008399.2 297606578 NM_001063381.1 115466493 NP_001056846.1 115466494 Q84UI5 MPK1_ORYSJ
Os06g0154500 Os06t0154500-02 204729 J023007A05 4268 LOC_Os06g06090.2 AK111691 19870 AP008212.2 255676632 BAF18760.1 113594886 NC_008399.2 297606578 NM_001063381.1 115466493 NP_001056846.1 115466494 Q84UI5 MPK1_ORYSJ


Chromosome: 6 ,  position: 2,805,559 - 2,811,925 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 attccgcctc cactttccct tcccttcctc ctccacctcc acctcctcgt cgcgatccaa 
000061 atccgaatcc ggccatggac gccggggcgc agccgccgga cacggagatg gcggaggccg 
000121 gcggcgggca gcagccgcct gctgcggctg cggcggcggg ggcgggggca ggggcgggga 
000181 tgatggagaa catccaggcg acgctgagcc atggcgggag gttcatccag tacaacatct 
000241 tcgggaacgt gttcgaggtc accgccaagt acaagccccc catcctcccc atcggcaagg 
000301 gcgcctacgg catcgtctgg ttcgtttgct cccccctctc tcccattccg ttggcggcgg 
000361 cggcctgatt ttggtttgga ttttggattt tgggtttgga tgacagctcg gcgctcaact 
000421 cggagacggg ggagcaggtg gcgatcaaga agatcgccaa cgcgttcgac aacaagatcg 
000481 acgccaagcg cacgctcagg gagatcaagc tgctccgcca catggaccac gagaatgtca 
000541 gtgctcccga tccgctccat tgtttcgacc acggaattcc cttccccccc acccaccctc 
000601 gatttttagg cgcagatttt gagattctcg ttgaatgctc ttgtctctgg ttagttaagt 
000661 tggttgcatt aaatggggaa aggaggagga ggtgagggtt aggttaccaa atgattgagt 
000721 tcgtcactgc tcggcctaat ttggtagagc ttttccctcc attcttgctg ctgatgatga 
000781 gtgctgcgag cttcagaaat agaggtaact ttggagatgc ctttaaagaa gccatctgcc 
000841 ttttggggat gttgttattc attgtgttct tgaatagtgg gggagcgagt gatgtgaaca 
000901 gacctgacct ggagagtagc aacatcacat gattctcgta cgtgctgatg tcacaagcca 
000961 caactagctt gaggaggagg aggaggagga ggaggaggag gaggaccaat ctggtgttac 
001021 acctttttcc taagtcagtc aaatccagtc tgaatgcagt gggagtgact gccagtgggg 
001081 agggaattag gggataggag tactaggaat tgtgttattg ttggaaagtt ttgagattga 
001141 ctttgtgtgt gcatgttgga cttggacctt tgaaatttac caatttaaag actgactaat 
001201 aggagtagcc cactgttgta tttcctgcgt aggcctgaag tatcattttc agcttaccag 
001261 aggcaacata ttttttctat ggttagtggt agaaagacag ccacagggga agtgaattag 
001321 agaataggcc atatcttcat agccagccct agaaaaactc agcttcttct gaagaggtga 
001381 attaaatttg gatggtcata aatattccgt tataattaaa ctagtggatt ttcccatgca 
001441 aatatgagag gagctagatt taaaattaga gttatatttt gtatagaatt tactggtcaa 
001501 cctggaccgt tgtaatctag acccaccact ataataaacg ggcatatatt tatctttttt 
001561 ccccgattaa tgtcgttatt ctaggcttct agattgaacg tggtggcacc cttttgcacc 
001621 ctctttatta taacataata gatcaattga tacttcccta aaaaaggttc atacaaaaag 
001681 ttgctcagat actgcttttg ctgaaccata gactggttga cacaggcata cacaaatgca 
001741 tgctcatgcc tttttttgga agttttttca aactaaaact gatccatttt gtttgtatcc 
001801 tactgcagaa agagaagtgt ttaatttcag gttttagtgc tccaattatg caggggaggc 
001861 ttttgggagt tataccagtt acgggtgttt gtagaaaacg atcggattag gcaaattttg 
001921 gagtagaagt ccttagataa tgcacctgct ttattgccat cagctaagat tgtgtatcaa 
001981 gtcaaattct acttttcaaa tctggctata aattcaattg tatgtacgga aagttggaaa 
002041 catgagctaa gatttgtaca tcaagtccaa ttctactttt aaaatatagc ttgcacaaaa 
002101 aatggctatt ttgcattatt acataaaaca ttacttccaa attggcgatc ctgtattctg 
002161 aaagatgtat tggaactttt tttttgtcat gtgcacgtgc tgcaggttgg ctgcagacag 
002221 aaggcagcag cccgagtagc gatttctggc tgcagtatat tacttcaata ccaagttatc 
002281 atttaattat gaagtgcact aagctgttgc tttctatgta catgtaagct tatctatgag 
002341 ataaaaaaac aaacaaacaa aaaaagcccg tggttaggat ggcttgcggc attcagctaa 
002401 gtcgagaaaa atgcccctga acgtggcacg tcactgggca tgcttaacct cacgcgggga 
002461 gcactcttct accagcatta acgagggggg attttttttg tgcaaaacct gggcttgagc 
002521 cttggtcggt gtcccctcta ccagagactc taccactgtg ctacacacac gtttgttcag 
002581 cttatctatg agataaatta ttagaatcct ctacataagt tattagaatt atgcaaagtc 
002641 tcctccattg cttccttcta ttgatctatt atatgtccat cttcgtctaa agccctttac 
002701 tagtcactat tcaagtcatc attagcttgc tgttcatccc cattacacac tctaattttc 
002761 attttaaggg aaatgcatgt tggtctgcct ccttaaaaaa ccaccatgtt tgagcgttta 
002821 aatggcaaaa acacttgagc tataacatta agccatcatg aataagatag atctctttgt 
002881 caagtcattt tcatatggta tttcctggtc catgcaatat gtttgttctt gctttggttg 
002941 gtctggacat agttgattta cttattttat ctactcctat aagatatttg gagctggtct 
003001 gttgtatttc acatatccag caagctcttg tgtttgcaca tcgatgctcc aaaaggcaat 
003061 aacttgtctc aacttcctac ttatgtgatg cagattgttg ccataaggga tatcatacct 
003121 cctccacaaa ggaattcatt caatgacgtt tatattgcat atgaattgat ggatactgat 
003181 ctgcatcaaa ttattcgctc aaatcaagca ttgtcagagg agcactgcca ggtaccttct 
003241 tcaaaagaaa aacacaactt tatttccact ttagcattta tttcatacaa atggcttttc 
003301 tggtctgctt ggattctctt gcttgtctag gcctctgctc aaattgagtt ttcaagacct 
003361 aaaaagtggg aagtattgaa gtatgtattg atggtttata aatgttttgt gtaagaacta 
003421 taaggaattt ggtacaaaag gttgaatgta aagcttttat ggtaattttg tatcacattt 
003481 taagaattct gcaggtatgc ataatctttg aaattaagaa acgaatttag cgacctacta 
003541 atatacctga acgtaccttt gccctgcaaa gcatatatgc aaagtgctac aattaggtta 
003601 tctcagtgca ccattgatca ttggatcaaa ctaacgtttt ctttggagat accatattat 
003661 ttgctaaccg atataaaatc gaataatgag ttgattgcta tttatcagta gaccacatac 
003721 tgttaggagc tggcggcaag gcaccgcagc tccgaaggtt gtagcagtgc ttgacgggag 
003781 ggtgatgccg atgccctcgc ctcccacaaa gccatggtga ggagaaacag agaaaagagt 
003841 ggccttatat aggcgattac aatctgctaa tgaatcagaa ctaactgaaa caaacctcaa 
003901 atcttaaggg ataactctta tctaatgcaa gcaacagata acggcgagaa cgacactgtg 
003961 gcgtgccatg cacgctcacc gaactcgtgt tcttgagaca ttcaaaggat tccccacata 
004021 acacattcaa cgtgagaagg gttcaatgcc caatcacact ggagaggtct tgctgtattg 
004081 cagcttgcaa gctcttatga tcaatgctac agatagatct ctccctttct tgagtggaac 
004141 tctagaatgg ctgcctcacc tatctttcct tatccagata acttgattgt gttctcttgt 
004201 attttccttg tgcatgcatc taccatgttc tgagaaataa tacatgtttg gtataactgt 
004261 tcttgcgtaa ttctttacct ttttgtgcag tatttccttt atcagattct ccgtggcttg 
004321 aagtatatac attcagcaaa tgtccttcac cgagacttga agcccagcaa cctacttttg 
004381 aatgcaaatt gtgacctcaa aatttgtgat tttggacttg ctcgtaccac ctcagaaacc 
004441 gattttatga ctgagtatgt tgtcacaaga tggtataggg caccggaact tctgttgaat 
004501 tcctctgaat atactgcagc aattgatgtg tggtctgtgg gctgtatttt tatggaactc 
004561 atggatcgta aacctttgtt tcctggaaga gatcatgtcc atcaattacg tctactaatg 
004621 gaggttagaa cacactctta tcttttgaac tttattttat attgaattga tcaggttatg 
004681 ttgtgtggtc atatatttag cataactgga gtactgtttt ggaaatatat aatatgttga 
004741 ttatcctatg ggaatatgtt aaaactaagg aaaatgcaaa gaggagagaa tttatgttgc 
004801 tccagaaggt cctggctttc tggctgatat gcaggatact gaattctgag tcatggctat 
004861 taatacaaac gcatttctca ctagaggatt tatatactat ctgtttcaca ttattgtgtg 
004921 tttgattttc ctatcataaa tttcttaatt gcagctcatc ggaacgccaa atgaggctga 
004981 tctggatttt gtaaatgaaa atgcaagaag atacattcgc caacttccta gacatgcaag 
005041 gcagtccttt cctgaaaaat ttccacatgt tcatccttta gcaattgatc tggttgaaaa 
005101 gatgctgaca tttgatccta gacagagaat aacaggtcag tattggcata gtatgtttta 
005161 gtgatttaaa gggcatttga atgttgtttt tgccatctta tctatcttgc caatagcaag 
005221 taaaaaatag gcctttctcc taaagaaaga aaagagtgaa agaagccttt gaaagccctc 
005281 ataaactatg gtttttttta acaccatgtc tacctttctt ttaatctgcc actggccatt 
005341 tctagttagc gtttaccact tcctatctgt tttaagatag aaagtaacaa ctgcagtgga 
005401 tacttaaata tatttgtaga gcatctgtgc atgacttcta tattactaaa tcacatgcaa 
005461 acctaaatat tttttttaaa aaaaaaaact atgtcgatcc tttttacctc ttgatccacc 
005521 ctaacctaat ccaggtggta taggtgtgtc atcactttat tcttaatgcg tgaattgagc 
005581 atcattctta actcataggt gggaatgttg aaagagtcat tgccttgtgg tgttttctaa 
005641 tgttgaaaat gcattgttcc ctgtgtcaaa acttttgacc tgattttctc tgcatgtttc 
005701 atattactga atgccccctt atcttttctc ctatttcttc ttatccagtt gaaggtgccc 
005761 ttgcacatcc ttacctggca tcactgcatg acataagtga tgagccagtc tgctcatcac 
005821 ccttcagctt tgacttcgag cagcatgcat tgtccgagga acaaatgaag gatctaatct 
005881 accaagaagg ccttgcgttc aaccctgatt accagtagct ggtgttctat ttcagccttg 
005941 gattgattct attcatatgg agttttttcc tcctgcgcca caaaaggtcg ccgacagtga 
006001 tcactagttg taaataattg cctcacctga aaaatcctcc ctggttcaaa gctgaaggtg 
006061 ttgttctaag agtagaaatg tactttgtga tcaagttcct gggtagctgc tatgccattc 
006121 ttatgcttat gtatgttgtt taatgtggga tttttttcca tcttaaatgt ttttagtccc 
006181 ttttgtaaga agagttagtt catgaacgat gacggcctaa attctgcggt tatcatcaaa 
006241 ttccccattt tcttgtcgat tcatggattt ctcatggttt tacttaatgc tccatgttgt 
006301 aagacgtggt caatggaaga ggatatattg actcttgatt cagtggtggc agtttggagt 
006361 tgatcgt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ464400 bags34c14 644
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ686314 whpc5g13 826
more... (Total Hit Count: 30 )
/rice/oryzabase