cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK111644     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0611900 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 25,276,549 -  25,281,038  ( - );   4,490(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,276,549 -  25,276,953 ( - );   405 (bp)
Exon 2 Location 25,277,063 -  25,277,180 ( - );   118 (bp)
Exon 3 Location 25,277,460 -  25,277,558 ( - );   99 (bp)
Exon 4 Location 25,277,647 -  25,277,772 ( - );   126 (bp)
Exon 5 Location 25,277,855 -  25,277,932 ( - );   78 (bp)
Exon 6 Location 25,278,021 -  25,278,209 ( - );   189 (bp)
Exon 7 Location 25,278,841 -  25,278,993 ( - );   153 (bp)
Exon 8 Location 25,279,440 -  25,279,553 ( - );   114 (bp)
Exon 9 Location 25,280,231 -  25,280,416 ( - );   186 (bp)
Exon 10 Location 25,280,500 -  25,280,625 ( - );   126 (bp)
Exon 11 Location 25,280,708 -  25,280,903 ( - );   196 (bp)
Exon 12 Location 25,280,993 -  25,281,038 ( - );   46 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum
Os06g0611900 Os06t0611900-01 203552 J013129F05 3248 LOC_Os06g40940.1 AK111644 9938
Os06g0611900 Os06t0611900-01 203552 J013129F05 3248 LOC_Os06g40940.2 AK111644 9938
Os06g0611900 Os06t0611900-01 203552 J013129F05 3248 LOC_Os06g40940.3 AK111644 9938


Chromosome: 6 ,  position: 25,276,549 - 25,281,038 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gccttgtgcg caagagcccc tacttaaccc acccgatctt taacatgtat gtgatgttaa 
000061 aaggcatgct gcttttcttc actaatttct tgcagtgtta aaagataaaa ctgaacttat 
000121 gttgtgggct tccaggtacc atacagagca tgagcttctc cgctacctgt acaagttgca 
000181 atccaaggac ctttcactgt gccacagtat gatccctctt ggttcttgca ctatgaaact 
000241 aaatgctaca gtggagatga tgcctgtcac ctaccccaac tttgcaaaca tgcacccatt 
000301 tgcacctact gaccaagccg caggatatca tgtgagggga attcagcatt tgtttagttt 
000361 ctaaatgcaa actgttcatc agatgatctg aaatggcttg ttttgtgatg aaggaaatgt 
000421 ttgatgactt gggcgatctg ctgtgcaaga tcactggctt tgattctttc tctttgcaac 
000481 caaatgctgg tgcttcaggg gagtatgccg gattgatggt tatccgtgct taccacaggg 
000541 tatgtcatca taaataagtt ggcatagctc tcctgttttg tttcacattt tatatttaca 
000601 aaccatgtta taaaaactgc aggcaagagg agactaccac cgggatgtct gtatcattcc 
000661 tgtgtcagcc catggtacaa atcctgcaag tgctgctatg tgtggaatga agattgttgc 
000721 tgttggaact gattccaaag gtaacattaa catcgaggag ttgaggaaag ctgctgaagc 
000781 aaacaaggac aacttggctg ctcttatggt actgttcttt ttgctctgta aatgttatca 
000841 tttatctggt cttctggtag tactgtggaa tgcctatggt ctctctggtc aactattcac 
000901 tgttaaattt agagctagtt ttctaatact gtactatcac tgcatcacct tttcgctata 
000961 tttagcgtgt tgcttaaagt cataaggcta tttctgtact ttttgttgtt tctaatatat 
001021 attaggatag aaaccagata gctgctccat aacatgatcc ctatagtggc tgtatttgta 
001081 tacattcaat aatttgaagt taatcgacat atataataga aacaaatccc cagttagttt 
001141 agtttatctt tttccatatg agcaatttta tagtctttga gaaggtacca tgagatacca 
001201 ctttttccat tgtaaagttg atacctcctg gtatctaatt actaggaggt accaaatttt 
001261 acactaaatt tttagtacct catggtatct tctcaaggat tgtaaaattg ctcttttcca 
001321 tataggctat agtccgcggg tgatttgtga ataagatttt ttttattatg ggcatagaaa 
001381 cataatagtt cactcaggtt gatttgattt ataaaacaag attttgaaat atgttggcct 
001441 tatgcgtaaa gtaacagaat gttgcgtggt tgctctgttc accaggttac ctatccttcg 
001501 acccatggag tctatgaaga aggcattgat gagatatgca tgataattca tgagaacggt 
001561 gggcaggtct acatggatgg agctaacatg aatgctcagg ttagttgttt gcagtttatc 
001621 atgccatcag tctagcatgc tctcttcaag tcttgatgga ttggaacgca ttggggtgag 
001681 gctctataaa tcgtacagat ggccttttgg catggcgatg attaaaaaaa caattagttg 
001741 tgcctatgaa ttatactaaa catgtttatg taacaagtct attttaattc agttccaaac 
001801 acaagtatac cttgttttga aacaaacaca gaagtaccaa ctttcatttg catgtttatc 
001861 tttcaatgac ccttatccaa ttaattatgc tgagatatgc tatcttcaat aaaatatgat 
001921 aagctttctc caagttcatc tgatcccaat tgagaacttc tgttatcgta atttcaaaaa 
001981 accccatctg tcgagccaaa aatattcaat acactcccta actaacagaa gttgtctttt 
002041 tacaggtcgg attgacaagc cctggcttta ttggagcaga tgtttgccac cttaaccttc 
002101 acaagacatt ctgcattcca catggtgggg gtggtcctgg aatgggtcct attggtgtta 
002161 agaagcactt agcaccattt ttaccatctc atccagtggt aggtgctctg aattcaatgt 
002221 gctgataatc taaacagatt aatgctcaat gcccaacact taccttgaaa tattagacaa 
002281 gattgatata acacagaatg ctagacgacc ttagaaaaat tccatcttta ctcttttaca 
002341 gaattaggca aattatacga aatcatgtta cactctataa ctagtctttt atgatgtgtt 
002401 ggactgagta tatttcagag gattccacac aaacatacat ttctctatgt catcaacaat 
002461 gctgtgttga tttttaaaaa ctagtttcct tgtaatccta actccttcaa ctcgagaact 
002521 attgctggtt ttattttctc gctttcttgg tgccacatta gcttaggtgg gtatgctaag 
002581 tgacacctta ttttcatttt atattaacct aaactcctga agcaagactt gcctgcatca 
002641 tttttcatat caaaagcata gtacggtgat attatgtaaa aaaatgctgt agaagttttt 
002701 gttgatgata aaactactaa accacattcg gtactaaaac cagaagtgtt cgttcataat 
002761 tccatcattc tttttaacaa aaaaaagcag atgctacttc attaactaga ttaattctgt 
002821 aattatcaga tcaccaccgg tggcttccct ctccctgaga aaaccgaccc tcttggtacc 
002881 atttctgctg ccccatgggg atcagcgttg attctaccaa tttcctacac atacatagcc 
002941 atgatgggtt ctaagggtct cactgatgct tcaaagattg caatcttgaa tgcaaactac 
003001 atgacaaagc gtctggaggt atatttgtta ctcgtgatca cctattgcta cctagtttga 
003061 ttgtgtttga actagttttc taagttttac catgttacct gtacagaaac actacccagt 
003121 tcttttccgt ggagtcaatg gaactgttgc ccatgagttc attattgatt taagaggatt 
003181 taaggtatct atcatagtta ttttggcatt tggaccttga gttatgcatt tcaattttct 
003241 taattggata tcgcaacctt ttgcagacga ctgctggtat agagccagag gatgttgcaa 
003301 agcgtttgat ggactatgga ttccatgcac ctactatgtc atggcctgtt ccaggcacac 
003361 ttatgattga accaactgaa agtgaaagca aggtaaaaca ctaaaacaca tactatattc 
003421 cttagcattg taccaaccat tcttttatat gagcttaatg tcacatcaat tatctcgcag 
003481 gccgaactag ataggttctg tgatgctcta atctcaatca gggaagaaat tgcagagata 
003541 gaaagtggca aagcagatgt gaacaacaac gtcctcaagg taaaatacta ctataccgct 
003601 atctgttttc atatattaga ttgtaagttc gtaacaccta tctatctata tacgggcaat 
003661 tatgttctta cccccaattc ttataggtta tataagatgt tagtagaccc cgttcaatcc 
003721 tagtcctcat gctgtatgca attttggaga tacattagca tggtccaaac tcaaaagttc 
003781 aaacatgagg cggctgcata gctcttgcat caccaggatg ttgacatgtg attcttgttt 
003841 tgttccgttg ttgtgcagag tgctcctcac ccgccccaac ttctgatgag cgactcatgg 
003901 actaagccgt actccaggga gtatgctgcg ttccctgcag cgtggcttcg gggcgccaag 
003961 ttctggccaa caacatgtac ctacttgctt gctttctgtg tctccaaaag atcgctctta 
004021 atttgctcaa cacaatttga caccaaccta atctgtattc tgccgtgtct gtgtgctctt 
004081 accaggtcgc gtggacaatg tgtacgggga tcgcaacctc atctgcactc tgcaacaggg 
004141 atcccaagtc gcagaagaag ctgcagctgc taccgcatga cgatcttccg ataatcaccc 
004201 agatttgtaa aacagcacca acaagtcata atgcttcctg taggagggaa gcatatgctc 
004261 tcttctcgtt cagcttccca acttgtatat agctttgtga cagctcctga ttctctcctc 
004321 agctgccacc ttctcctgta attctctact ccattgcttc cccattcccg ttcaaaggtg 
004381 aaattagctt tattgactag cattgctaca ctgctgagta caggaaaaga agttatgatt 
004441 catcttgcgc atgcgctcta tccatatagg gaaataaaaa gaaaaatagg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV940390 bah26o24 674
more... (Total Hit Count: 357 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ717289 whvd15h04 877
more... (Total Hit Count: 317 )
/rice/oryzabase