cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK073805     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0911700 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 41,452,868 -  41,456,666  ( - );   3,799(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 41,452,868 -  41,453,439 ( - );   572 (bp)
Exon 2 Location 41,453,679 -  41,453,755 ( - );   77 (bp)
Exon 3 Location 41,453,875 -  41,453,921 ( - );   47 (bp)
Exon 4 Location 41,454,376 -  41,454,473 ( - );   98 (bp)
Exon 5 Location 41,454,694 -  41,454,783 ( - );   90 (bp)
Exon 6 Location 41,454,979 -  41,456,461 ( - );   1,483 (bp)
Exon 7 Location 41,456,531 -  41,456,666 ( - );   136 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os01g0911700 Os01t0911700-01 209982 J033069I02 11789 LOC_Os01g68370.1 AK073805 39520 AP008207.2 255672756 BAF07076.2 255673990 NC_008394.4 297598437 NM_001051697.2 297598172 NP_001045162.2 297598173 P37398 VIV_ORYSJ
Os01g0911700 Os01t0911700-01 209982 J033069I02 11789 LOC_Os01g68370.2 AK073805 39520 AP008207.2 255672756 BAF07076.2 255673990 NC_008394.4 297598437 NM_001051697.2 297598172 NP_001045162.2 297598173 P37398 VIV_ORYSJ
Os01g0911700 Os01t0911700-01 209982 J033069I02 11789 LOC_Os01g68370.3 AK073805 39520 AP008207.2 255672756 BAF07076.2 255673990 NC_008394.4 297598437 NM_001051697.2 297598172 NP_001045162.2 297598173 P37398 VIV_ORYSJ
Os01g0911700 Os01t0911700-01 209982 J033069I02 11789 LOC_Os01g68370.4 AK073805 39520 AP008207.2 255672756 BAF07076.2 255673990 NC_008394.4 297598437 NM_001051697.2 297598172 NP_001045162.2 297598173 P37398 VIV_ORYSJ


Chromosome: 1 ,  position: 41,452,868 - 41,456,666 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ctcagtaact gcacccacct ccacacctac acgcacacag acaaacaaag ccaaaccccc 
000061 cgcctcgcct acatctcgcg ctctccgccc cccgcccgcc tccactctgc atggacgcct 
000121 ccgccggctc gtcggcgccg cactcgcacg ggaacccggg gaagcagggt ggcggcggcg 
000181 gcggcggcgg cggacggggg aaggccccgg cggcggagat caggggtgag gcggcgaggg 
000241 atgacgtctt tttcgctgac gataccttcc cgttgctccc ggacttcccg tgcctttctt 
000301 ccccgtcaag ctcaaccttc tcgtcgtcgt cgtcgtcgaa ctcgtccagc gctttcacca 
000361 ccgcggcggg agggggttgc ggcggtgagc cgtccgagcc ggcctcggcg gcggacgggt 
000421 ttggtgagct cgccgacata gaccagctcc tcgacctcgc gtcgctgtcc gtcccgtggg 
000481 aggccgagca gccgctgttc ccggacgacg ttggcatgat gatagaggac gccatgtccg 
000541 ggcaaccgca tcaggcggac gactgtaccg gcgacggcga tacgaaggcg gtgatggagg 
000601 cggccggggg aggagacgac gccggcgacg catgcatgga ggggagtgat gcgcccgacg 
000661 atctgccggc gttcttcatg gagtggctca cgagcaaccg tgagtacatc tccgccgacg 
000721 acctccgcag catccgcctc cgccgatcca ccatcgaggc ggcggccgcg cggctcggcg 
000781 gcgggcgcca gggcaccatg cagctgctca agctcatcct cacctgggtg cagaaccacc 
000841 acctccagaa gaagcgcccc cgcacggcga ttgacgacgg cgccgcgtcg tcggaccctc 
000901 agctccccag ccccggcgca aaccccggct acgagttccc ctccggtggc caggagatgg 
000961 gctccgccgc cgccacatcc tggatgccct accaggcctt cacgccgcca gccgcgtacg 
001021 gcggcgacgc catgtaccca ggcgccgccg gcccgttccc tttccagcag agctgcagca 
001081 agagcagcgt ggtcgtgagc agccagccgt tctccccgcc gaccgcggcg gcggcgggcg 
001141 acatgcatgc gtcgggcgga gggaacatgg cctggccgca gcaattcgcg ccgttccccg 
001201 tctcctccac gagctcctac accatgccgt cggtcgtgcc accgccgttc accgccggat 
001261 tccccgggca gtactccggc ggccacgcca tgtgctctcc acgcctcgcc ggagtcgagc 
001321 cgtcctcgac aaaggaggcc cggaagaagc ggatggcgag gcagcgccgc ctctcctgcc 
001381 tgcagcagca acgtagccag cagctcaacc tgagccagat ccacatctcc ggccatccac 
001441 aggagccctc ccctcgcgcc gcgcactcgg cgccggtcac cccgtcgtcg gccggctgcc 
001501 ggagctgggg catctggccg ccggcggccc agatcatcca gaatccccta tcaaacaagc 
001561 ccaatcctcc tcccgccacg tcgaagcagc cgaaaccctc gccggagaaa ccgaagccga 
001621 agccgcaggc ggcggcgacg gccggagcgg agagccttca gcgctcgacg gcttcagaga 
001681 agcggcaggt gtgcatgcat gcagacgatt gacatcaatc gctatccacc atagctagga 
001741 tctcacgcga gtgagaactc gattctcctc ctcacacaca ctccacacac tcaaaactca 
001801 ctcactcaca tcgctgtcca gggatagaat ctccaatatt tatcaaccta gctaattaaa 
001861 cggcatcgat tggattgctg caggcgaaga cggacaagaa cctgcggttc ctgctgcaga 
001921 aggtgctgaa gcagagcgac gtcgggagcc tcggccgcat cgtgctcccc aaagtgagac 
001981 agtcaccacc atctcgaaca ccttctcctt ccaaatccac taccccactt ggcacaaatc 
002041 cattccatgg aaggatccca cttgcacaca ctcacatact tgatgtttct cccctaatca 
002101 aagacggaat ttgcctgaac cttctcttca catttccgat catggtagaa ctaaaaagtc 
002161 tcccctttct tgatctgtgg atggtttcag aaggaagcag aggttcacct gccggagctg 
002221 aagacgaggg atggtgtctc catccccatg gaagacatcg ggacgtctca ggtgtggaac 
002281 atgcggtacc ggtgagtaat caacattcga tcgaagcatc aagcatgatt tgggattgct 
002341 tattaagctt gtttaagtcc acttgcttct ttgttaattg ggaggggata gaaacctctg 
002401 aaccagaaat agtaaatgac tatgggatgg tccctttccc aattgggcaa gtgggtcata 
002461 cgaacatatc attggaatct gggagtcaaa taggagcatg cattcatcgt gttctatgtt 
002521 gatgctcaag tgcatacaac aaaaaaataa aagtgatctt ttcctgctgt tttcagtact 
002581 aacattatgc atatgatttt tgctggttct gctgagctca tgtttttgat taattaattt 
002641 aattatttcc attggcaata ttatatatgc acaagttatt cgaatacatg atggcttaga 
002701 ttttgattca ctgacattaa tggatattga ttttcatgaa cacaggtttt ggcccaacaa 
002761 caaaagcagg atgtatcttc tcgaaaacac aggtgaatag caaacttttg aattattcaa 
002821 attttacagt cacaagccat gccaataact tccatcctta atttgtggct ctcaagtatt 
002881 gttgattaat cgttgtcata tgttttttca ggtgattttg ttcgttcaaa cgagctgcag 
002941 gagggtgatt tcattgtgat ctactccgat atcaagtcag gcaaatatgt aatgttcatc 
003001 catcattgcc cttcccactt ctttcgagta ctctttaact caactcagtt ggatgtgatt 
003061 ttgagtgcca ataagctata tatagttgct gcatgccact gtttgtcttt aattcggatg 
003121 accagtttgg cagtatcttt gtttatggag tacttctgtt aatttctgca agcagcagct 
003181 aattaattat taaccgtaat cttaatttat ctcttaatta ttagcagctg atacgtggtg 
003241 tgaaggtgag gcgcgcggcg caggagcaag gcaactcgtc gggggcggta ggtaagcata 
003301 agcatggctc gccggagaaa cccggcgtct cgtccaatac aaaggccgcc ggcgccgagg 
003361 acggcaccgg cggcgatgac agtgccgaag ccgcagcggc ggcggcggca ggcaaggctg 
003421 acggcggcgg ctgcaagggc aagtccccgc acggcgtgcg gcgttctcgc caggaggccg 
003481 ccgccgccgc ctccatgagc cagatggcgg ttagcatctg aagaaacaga tgacagcagc 
003541 agcagcaagc ttcagtccat ttgaaggtta attattagct agctagctcc gtattataac 
003601 cgatggtaaa acctcctaaa aaaattaatt aagttgtgca tgtgaatcgt agcgctagct 
003661 agggatgata tttgatcagt aacccgtagt ccccgtacca gtgacgctta agtacgcatg 
003721 gtttggttgt tcatcgttga acccctgtag tgtgtcgtcg tcctgtacat gcatcgaatt 
003781 atggaattaa ttaattacc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV917242 bags18b16 520
more... (Total Hit Count: 2 )
/rice/oryzabase