cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
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General information
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RAP - Accession No.
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AK109458
Link to RAP-DB
(
IRGSP 1.0
)
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RAP ID
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Os06g0160700
(
IRGSP 1.0
)
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RAP - Chromosome No.
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6
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RAP - Location, Length
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3,078,297 -
3,085,809
( - );
7,513(bp)
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Exon (Data source : RAP-DB)
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Exon 1
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Location |
3,078,297 -
3,078,960
( - );
664 (bp)
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Exon 2
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Location |
3,079,791 -
3,079,830
( - );
40 (bp)
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Exon 3
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Location |
3,079,966 -
3,080,018
( - );
53 (bp)
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Exon 4
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Location |
3,080,100 -
3,080,208
( - );
109 (bp)
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Exon 5
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Location |
3,080,333 -
3,080,457
( - );
125 (bp)
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Exon 6
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Location |
3,081,121 -
3,081,210
( - );
90 (bp)
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Exon 7
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Location |
3,081,289 -
3,081,351
( - );
63 (bp)
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Exon 8
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Location |
3,081,462 -
3,081,553
( - );
92 (bp)
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Exon 9
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Location |
3,081,650 -
3,081,731
( - );
82 (bp)
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Exon 10
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Location |
3,081,922 -
3,082,095
( - );
174 (bp)
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Exon 11
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Location |
3,082,192 -
3,082,273
( - );
82 (bp)
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Exon 12
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Location |
3,083,109 -
3,083,233
( - );
125 (bp)
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Exon 13
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Location |
3,083,321 -
3,083,398
( - );
78 (bp)
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Exon 14
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Location |
3,084,056 -
3,084,411
( - );
356 (bp)
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Exon 15
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Location |
3,085,320 -
3,085,809
( - );
490 (bp)
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Chromosome: 6
, position: 3,078,297
- 3,085,809
bp
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Now loading
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Sequence (Data source : RAP-DB)
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Nucleotide
Fasta Format
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000001 gtgccccacc gcctcagcgc ctctccctcg cttaaaacca aacccacaca cccacctctt
000061 ctctctctct catcgtctcc gcgactcagc ccactcctct ctctccacca ccaccaccac
000121 caccaccacc gcccgccaag cgcggcccgc ccgacacagc agcagcagga tcggcggaga
000181 ggagggggga tcatggcgac ggcggcgggg atggggatcg gggcggcgtg cctggtggcg
000241 ccgcaggtga ggccggggag gaggttgcgg ctccagcggg tgcggaggcg gtgcgtggcg
000301 gagctgagca gggacggtgg gtcggcgcag cgcccgctgg caccggcgcc gctggtgaag
000361 cagccggtcc tgccgacctt cctcgtgccg acgtcgacgc cacccgcgcc cacgcagtcg
000421 ccggcgccgg cgccgacccc gccgccgttg ccggactccg gcgtggggga gatcgagccc
000481 gatctagaag gtacgtggct tgtctcgtgc tgatcctccc tctcctcccg tatcaatgcc
000541 cgatccgtgc agttccatgc gcgcctttga tcacttgatt aatcgaacaa accctgcgga
000601 ttaattacca cgcgagaaat tggaacccca attcgagcac atcactaaca atttttatac
000661 tgcacatata cacaatatat atatttattg gatcgcgata tgatgggggt ggcgatgggg
000721 tgggcacctg ggaggtttcg aggcctgtgc acgtggctgg gtttgagcag acacgccatt
000781 gatgtagtag tatttgatat cgtaatttag tgggaagagg aatggtgagg tttggtgtag
000841 gaagcgttgg aaactgagta aattgacgac tttgtctttt ccttaggcaa gtacggagta
000901 tatgcgatac tcaagttggg agttcaattc tcagccgtca actgaatttt ctgtagagtg
000961 acagtagcat ttcgtaattt tcgttgcact gaattgtggt cgatggcgcc attttctgtg
001021 gacggtccat gtgtacctag acaatcacat gggcgcctgg gaccaatatg tgcttttcct
001081 atcactagac ccacctcgct atctgttgga ttctctgggc tgccaccaat atgtgtttcc
001141 tgattatatg acgtactctc acctcacctc acctctctaa aatccaatta tttagagggc
001201 agaagggagc aatgacaacc tgaatttggc gttattcaga tcagaatgtt gtttgcatta
001261 ttgtaatgct cccattactg ctgtactgcc atgccaagat gtggctagaa aacgataatt
001321 atttatgttt ctgctgtatt tttcttgggc ctctcggcca atactatacc atatgaatat
001381 cttttatttt gcattcaggt ctcacagaag attccatcga caaaacaatt tttgtggcta
001441 gtgagcagga gtctgagatc atggatgtga aggagcaagc tcaagctaaa gtaacacgca
001501 gcgttgtctt tgtaaccggt gaagcttctc cttatgcaaa gtcaggtgga ctaggagatg
001561 tttgtggttc actgccaatt gctcttgctc ttcgtggtca tcgtgtgatg gttgtaatgc
001621 cgagatacat gaacggggcc ttgaacaaaa attttgcaaa cgcattttac actgagaagc
001681 acattaagat tccatgcttt ggcggagaac atgaagttac tttttttcac gagtataggg
001741 attctgttga ttgggtgagt attcaatctc cttactattt tctgatgaaa acaactatct
001801 gcttatcttt tttgttctta tcccactgaa gacatgatca tatcatattc tgtactctgt
001861 ttctatgtct tactgtctat acacttgtgc actggttgat gtctggtgtt tccagatcaa
001921 aatgcaaaag attccttcat atgacttaat gtatccattt tatgtctcaa gcatttgtga
001981 cttctgtttg caacaagcac ttaatattaa taagttgtac tgtttggctt ttccattgca
002041 ttaatagtca tcagtaacat tgtagttata tcatgggaat tatgtacttc aatcgcattt
002101 ttatttcttg aaagtgaaca tgtgggttac attgaaacat gtattgtcac aactggtaat
002161 agatgtagat ggcatgacat gataatcatt aaggaacaag gatgtgtata acctaggagg
002221 aaacatttct agcatttttg gttgcaagat tgattccttg ttgagtttac caaatgttta
002281 cttattccta ttggaacttg gtagtgttca ctccgcagca ccatcaccca tgacacaaca
002341 tgctgattgt agaaagcata cctgcatttt gggtacttat ttttttgtta cacctcactt
002401 ctcctgttca ggtgtttgtt gatcatccct catatcatag acctggaaat ttgtatggag
002461 ataattttgg tgcttttggc gataatcagg tattcttaca tcaagatcct atttgaccag
002521 tctaaattat atcacattga gtcattgatt cgacttgact tccctatata ctgcagttca
002581 gatacacact cctgtgctat gcggcgtgtg aagccccatt aattcttgaa ctgggaggat
002641 atatctatgg acagaaatgc atgtttgttg tgaatgattg gcatgccagt cttgtgccag
002701 tgtatgttct ggatctgaaa ctctgcaacc aaattgatta acattgaata tctcttataa
002761 accatttttt tcatacgttt gctttgtgtt tgtgtgtgtc tatgttagat aagaggaaca
002821 aaatattaga ttgagtgaat aggaggattt tctcaatcat tttttttctc aaaagcgcag
002881 gagaactgcg attcatttca ttattttctc aatcattttg atatttccaa aaacatgaac
002941 agtccagtac atcatttatg tgtttaaatg atttagtttt gtgctacact agttcatagc
003001 tgatctgaaa atctccctgc ctatgttttt tttggaatat ttctgagcta gtgcgaagtt
003061 tcttattatg gtagtgccta ttttgagttc atcttctaca gatacaattc aatacccaaa
003121 ggatttggga aaaatcctgt agtctaaatg gcctatcatg ctactaggtg actgaggtga
003181 tagtttgcaa ccctctaatt tgtggtaaat ttaaactgct tgtttcacac cataatttga
003241 tgttataatt attaagagag tgcgtggtac atgctttcta acttctaaga cacttcagaa
003301 caacatgagg ttaatggtgt aatgtctttc gctgcatatt atgaatatgg tttgatccat
003361 cagatgctac attgctactc ctttgttttg gcatgttcct cacggtggat aagatactaa
003421 tgccagtgaa aaactcatca cacttatttt ttagtccctt tttacttcaa tgctgaatgt
003481 taaattggtt ttccttacat atcaatttaa atataacttt tatcttgttt atccagcctt
003541 cttgctgcaa aatatagacc atatggtgtt tacagggatg cccgcagtgt tcttgtcata
003601 cataatctag cacatcaggt ttgagcctat cattttgcat atcttttaag tagttttgta
003661 atggcacttt gtaagtgcag tatgttagta tttcattgtg tttcaatgtg atagggtgtg
003721 gagcctgcca gtacatatcc tgacctggga ttgccacctg aatggtatgg agcattagaa
003781 tgggtgtttc cagagtgggc aaggcggcat gcccttgaca agggtgaggc agtcaatttt
003841 ttaaaaggcg cagttgtgac agcagatcga attgtgactg tcagccaggt gagattcctt
003901 ccttttcgtc tactagttgg cttacggcca cagtcaaaat ttgaaatttg aacttaacct
003961 tagagttgat ttttttttcc catcctagtc tatttttatg ccttggcttt taaaccgcaa
004021 attcttcgtt cattttgtct tgcactcaat taaggaatca tttatgtttc attaccaggg
004081 gtattcatgg gaggtcacaa ctgctgaagg tgggcaaggc ctcaatgagc tcttaagctc
004141 ccggaagagt gtattgaatg gtacctatat ttgggttttt atattttgtt cttggactga
004201 tcattgtaat agggtggatg atacaaatta attcaatcta ttccctggat atgtaggaat
004261 tgtaaatgga attgacatta atgattggaa cccatccaca gacaagtttc tcccttatca
004321 ttattctgtt gatgacctgt ccggaaaggt gaagtatagt accatgtata tacagattgt
004381 catctcgttt catttttttc tttgcacctc gtcgtttctt tcacagacta atttatgaaa
004441 cctcgaattc atgtttaggc caagtgtaaa gctgaattgc agaaggagct gggtttacct
004501 ataaggcccg atgtgcctct ggttagatac aaatatttat gaaattattt attttagtat
004561 tcttttatgg gcagttggat ttattagctt tatttacaga ttggctttat tggaagattg
004621 gactatcaaa aaggcattga tctaattaaa cttgccattc cagatctcat gcgggacaat
004681 attcaattcg taagttctgt tttctttttc tgcgtgagac tagaaagtga atgtgataga
004741 tcttagtgta tatagtagta tattgacact tatatagctt gttatcatga atctaaggaa
004801 tgtaatatgc agctattgct ttcattgtga acgcatatgc aagtaaacta gtatttcaga
004861 tgcaaatatt agtgctataa gaaaaaatgc atatgcaagt cataaaagaa agatagcagt
004921 agtataactt gaccactgta tgacttatta gcaaccatcc agtgtgatat caattggagc
004981 acctgcttgg ccagccagtc tgttatttcc accctttata cattttgggt acactaaaca
005041 acatcttctg acagacacca ggggacgcgt atacatgcag acaaaaggat caccatttat
005101 taagtcagta ggatctaact tgtaggcagc aaatgtcttg atgaactgca accacgtgct
005161 tatcccaaat acttcattgt tgggggtttc tggctttcaa ctggagacta aaacagagta
005221 gtgtttgtag tgggttttaa aaaattttat ccacatattt tagccaacaa ctgaaatcga
005281 ttgatcaatg acacctttta atacttcttt ttttcttaaa aaaaatgaca ccttttgttt
005341 tttttgttat aggtcatgct tggatctggt gacccaggtt ttgaaggatg gatgagatcc
005401 acagaatcag ggtacaggga taaatttcgt ggatgggttg gatttagtgt tccagtttcc
005461 caccgaataa ctgcagggta tgcaaaataa cttcgccaat aatagtcatt tgtcagctaa
005521 ggatgcattt acatttgaaa tctcaattaa ttttgctgat aaagttacat ttgaaatatt
005581 gatgcctcta tttttgtaca gttgcgatat attgttgatg ccatccagat tcgaaccttg
005641 tggcctcaat cagctatatg ctatgcaata tggtacagtg cctgttgttc atggaactgg
005701 aggcctcaga gtaagctttc ctatagtgtg acacttatgt cagcacagca cccaaggcag
005761 agctgctcac ttttttttat ttattcaaca ggatacagtg gagaatttta acccgtttgc
005821 tgagaaagga gagcagggta cagggtaagg aatgcttcat taaagtaaaa ttgcagattt
005881 attttatttt agtggaatta attaaattca attttttttt gtatattatt caatttataa
005941 ccaattaatt taactgttgc tacttgggac atattgcagg tgggcattct cgccactaac
006001 cattgaaaaa atgctgtggg taagtttatg ttgaacctgc acctagtttt agttcttcta
006061 tccattcctt aatcccatta tatatgccat acaacatcaa tactattggc cctcttaaca
006121 tcaatagcat gatgatttca actatgcatt ttggttgtat cgtatactgc tatttttctt
006181 gccggtaatc ataatgtagt ttgattcttg ccagaagtaa aaaggataaa acaaggtgag
006241 gctcatgacg tatgttccag ccagttctgg ttattgtctg gtattccagt aggattgaac
006301 tcctagtact tgttagtttt cagatttaag taaatattat aagaaagagt tgacaagcaa
006361 actaaagaaa aggaacacac gtgattgaaa tccaaagaag aaagcggctc agcacttggt
006421 gggttaatgg gaaactggaa ttagtgggga atagaaccct gaagcatata tgtgcttagg
006481 ttgctaaatt gctcgactga ccagtccatg atttgaattg catgtttggt acatacttcg
006541 aatgtggaaa cagggaaaca gggcccattt tgtgtcattg aacacttcaa atgaaactga
006601 taaaaaaatg gatttgacaa ggaaagattt gcattgcttg tctacaattt aatgtgagta
006661 ctagtcagtt ttgttttgcc ttgtactcaa gtagtcaaga taataattag ggaaagctac
006721 aaactttgtt gagaaaacat tgtagaatca gtaataaaag cctcattgaa aatggtattt
006781 tcagggcaca agcattacac catatgaact tttggagtat gtactaaaaa tttgcatcgt
006841 ttcttgcagg cattgcggat ggcaatttcg acatacaggg aacacaagtc ctcttgggag
006901 ggtctaatga agcgaggcat gtcaagcgac tttacatggg accatgccgc ctcacagtat
006961 gaacagatct tcgaatgggc cttcatggat caaccatatg tcatgtaaat ggatttgaag
007021 gaagcagcga atttctccga ggaccctcaa tcttcctgtc tttcatgagc ggaatgaaaa
007081 ctttgtacac tacatggaaa gggaaccagt tatgcaaagt tgcaaacgat cactcaaggt
007141 tacccttgta ggcctgctac ttggccaata tggttccagt gaccatatgc agagtcaggt
007201 tcagatgaat ggcacttgtg agtagtgaag aataagatga ggatgcttga agcggtttca
007261 catgtggctg ataccacgca agcaacctct caatgcatcg aaatgtgagt cttggaatca
007321 ataggattta gctcccatca attacagttg tacccttttt tgcttaatac tttgtcgcct
007381 gtgctgttct tatatttgtg tgaagataaa ttttagtcca ttaggtaact gtattgttga
007441 gtcttaaggt gaagactaaa tagtgtttgg aagctgtagc tactgcgatg tcaagtgtca
007501 aaagagatct tgg
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Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
Update info.
