cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK107056     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0498800 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 18,416,965 -  18,419,483  ( - );   2,519(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 18,416,965 -  18,417,361 ( - );   397 (bp)
Exon 2 Location 18,418,697 -  18,418,737 ( - );   41 (bp)
Exon 3 Location 18,418,978 -  18,419,039 ( - );   62 (bp)
Exon 4 Location 18,419,198 -  18,419,483 ( - );   286 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0498800 Os06t0498800-01 002121D08 109907 002121D08 16708 LOC_Os06g30370.1 AK107056 7402 AP008212.2 255676632 BAF19615.1 113595741 NC_008399.2 297606578 NM_001064236.1 115468203 NP_001057701.1 115468204


Chromosome: 6 ,  position: 18,416,965 - 18,419,483 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atccaagcta gctatagcta gtatatatct gacaaattca gagaaattca gagagtcacc 
000061 gcgagagctt aagctagcta gctagccggc catggcatcg catgtggacc cgctggtggt 
000121 ggggagggtg atcggcgacg tggtggacct gttcgtgccg acgacggcca tgtcggtgcg 
000181 gttcgggacc aaggacctca ccaacggctg cgagatcaag ccgtccgtcg ccgccgcgcc 
000241 gcccgccgtg cagatcgccg gcagggtcaa cgagctcttc gctctggtca gcacacacac 
000301 acacgcacat gtgcagcaga attatacttg tgttaattac tagtcccttt tgacataagc 
000361 atgcttaatt actgccttga tctgactatt tgatcgacac atgtcgtgtt ttgttgcgac 
000421 ctgtgtgtgt tcgtgcgtgg ttaggtcatg actgatccag atgctcctag ccccagcgag 
000481 ccgactatga gagagtggct tcactggtaa ttaattatta ttactgttac tgtttttctt 
000541 ttagtctttt aataataaat atggtatata cctatatata tatatctccg gcgtgtggca 
000601 acatgcacac ggctaattta ctgttactgt tatgcatgaa ctcgccatga atttaaatgg 
000661 tgattatttc gcattgtgtc tttttccttt tgaagttacc gttgcggttt tctttttttt 
000721 ttaactgttc tattgttttg gaccaggctg gtggttaaca taccaggtgg aacagatcct 
000781 tctcaaggta aataatcatg caagcatgct agtaccttat aatttcctaa acaagcttaa 
000841 gtgatatata tagtacagta ttacttccta attgacactc tttcttccat gcatcttcac 
000901 ttttactata tatagtcaaa tatatcatgt attagagtgt gtttagttca cgctaaaact 
000961 gaaagtttgg ttgaaattgg aacgatgtga tggaaaagtt gtaagtttat gtgtatagga 
001021 aagttttgat gtgatggaaa agttgaaagt ttgaagaaaa agtttggaac tggccgtgtt 
001081 tagttcaccc ccaactaccc caaacttcca atttttcatc acatcacatt acatccaaaa 
001141 ctttcctaca cacataaact tttaactttt tttccgaact ttcaactttc tccaaacttc 
001201 caatattttt taggaactaa acacagccta aacaaggcct taattcccca caatgcaatt 
001261 aaccgagttg catgcactga ttttgccctg tgcaaggaag gtcgctagca agcgctagta 
001321 gtagcagtaa gcaagtagca accgaccggc tagattcggc gtagctatgc agagcctgtg 
001381 tccatttcag ccagctatag ctgcaggctg cgcacagtag gtgccagccg gcgagcggcc 
001441 acctgtcggc cgccacgagc aacatgtggc ggggctgcgg gccccgccgg tggtacacgt 
001501 gtaagcccac ctccgcactc cgcgccgcca cgtgtcgcac gccggacgac gacgtcggcc 
001561 gccaccgtcg tcatcgtcat ccggccggtc gtctcacatc gctagctgga tttaattagt 
001621 ttaattcgtt ggattaatta aacagggagg aggctaatct agtctagcta cacggttgtt 
001681 ttggctctca tcgaccctga tccaacgaca aaaaagacgt cgcctagctt tttttgagtt 
001741 cgtcctggta gggtgggtgg tgtgacctgc tggcgtgatc tttttcatct ggcgactctt 
001801 ggaagctttt ggccaaggac acgtagtcgc ttatccatga tgattaattc acactgtaca 
001861 tttggtatct tcgtagtcaa gagtaagatt gctagctagc taattcaacc caagatcacc 
001921 cgtcaagagt tatagtggag ttggttcgca cgcgcacggt tgatcttgta acagcgaccg 
001981 tcgtcttatc gttgattaaa gctgcatcat aatttgattt gataattaac acatgaatta 
002041 tattactccg taggcaagca gcagccagaa gctgtttaat tactgatttt gatgtgttcg 
002101 tttaatttgt ggatcgatgc aggggatgtg gtggtgccgt acatggggcc acggccgccg 
002161 gtggggatcc accgctacgt gatggtgctg ttccagcaga aggcgcgcgt ggcggcgccg 
002221 ccgcccgacg aggacgccgc gcgcgccagg ttcagcacgc gcgccttcgc cgaccgccac 
002281 gacctcggcc tccccgtcgc cgccctctac ttcaacgccc agaaggagcc cgccaaccgc 
002341 cgccgccgct actagcctcc ctcccctcgc tcggcgtcgc ccatccatcc atccatggac 
002401 ggcgacggcg acctagctag ctaataagcc atcggtcggc catgctcgcc gtccaaacta 
002461 tcatgcacca tatcatgtcg tcgtttatgt ggttaattaa ttatttccgg cgttttatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ632217 whdp10l22 511
more... (Total Hit Count: 14 )
/rice/oryzabase