cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073640     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0639100 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 27,366,676 -  27,370,155  ( + ) ;   3,480(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,366,676 -  27,366,996 ( + ) ;   321 (bp)
Exon 2 Location 27,367,281 -  27,367,521 ( + ) ;   241 (bp)
Exon 3 Location 27,367,602 -  27,367,682 ( + ) ;   81 (bp)
Exon 4 Location 27,368,082 -  27,368,189 ( + ) ;   108 (bp)
Exon 5 Location 27,368,302 -  27,368,421 ( + ) ;   120 (bp)
Exon 6 Location 27,368,779 -  27,368,943 ( + ) ;   165 (bp)
Exon 7 Location 27,369,034 -  27,369,123 ( + ) ;   90 (bp)
Exon 8 Location 27,369,775 -  27,370,155 ( + ) ;   381 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0639100 Os01t0639100-01 209801 J033052B21 11666 LOC_Os01g45190.1 AK073640 1619 AP008207.2 255672756 BAF05587.1 113533204 NC_008394.4 297598437 NM_001050208.1 115438786 NP_001043673.1 115438787 Q5VNM3 RH2_ORYSJ
Os01g0639100 Os01t0639100-01 209801 J033052B21 11666 LOC_Os01g45190.3 AK073640 1619 AP008207.2 255672756 BAF05587.1 113533204 NC_008394.4 297598437 NM_001050208.1 115438786 NP_001043673.1 115438787 Q5VNM3 RH2_ORYSJ


Chromosome: 1 ,  position: 27,366,676 - 27,370,155 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tctttctagg gtttcgtctc ccccaatggc ggcggccacc acgtcgcggc gcggcccggg 
000061 cgccatggac gacgagaacc tcaccttcga gacctccccg ggggtcgagg tcatcagcag 
000121 cttcgaccag atggggatcc gcgacgacct cctccgcggc atctacgcct acggcttcga 
000181 gaagccctcc gccatccagc agcgcgccgt cctccccatc atcagcggcc gcgacgtcat 
000241 cgcccaggcc cagtccggga ccggcaagac ctccatgatc tcgctctccg tctgccagat 
000301 cgtagacacc gccgtccgtg agtacgcctc ttacccacca atctgacatt ttacttcagt 
000361 atttccactt tttcccccta ctgtgcgatc tattttgctc tagattaact tgcattgcag 
000421 catcgtgcta gtactgtgcg atctatttta ctagggttta gcataatgtt ataggtgatg 
000481 gcttccaaat ttattagagc tgtactgctg tacacaaatt ctttccatgc ctgttttggt 
000541 gctgattatt gttcactgtt gttgtctatg ttcccgtaat cctaatattg tttctcatta 
000601 tgtagggtgc aggctttaat actgtcacca actagagaac ttgctgcaca aacagaaaga 
000661 gttatgctgg ctatcggtga cttcatcaat atccaagtgc atgcttgtat tggtggcaaa 
000721 agtattggtg aggatattag aaagcttgag cacggagtgc atgtggtgtc aggaacacct 
000781 ggcagagtct gtgatatgat caagagaagg accttgcgta caagagccat taagctccta 
000841 attctggttg gtttactttt catgttgttt ttgaaaccac ctttggtttg atcaaatggt 
000901 atgagaataa cattcttcca tgacaggatg aagctgatga gatgttgggc agaggcttta 
000961 aggatcagat atatgatgtg tacagatacc tccctccaga actccaggtc aatctcatat 
001021 taaacctgtc ataaacttat agtttgtctt gtgtttcagt gttctatcag ctagttgatt 
001081 attttaataa gaattcagct cctgaagtgt attgtaatct atttttcatc tctggtgcat 
001141 ttttccttgc actgttccat ccatgttttg atccttgtaa catatcatca taccaacaga 
001201 ctagctatct tgtctctgtt tggattcagt aatgcatgct ttattatatg ctgatatgca 
001261 tatgcagatt tgcttattgt aatgccacct ctggcttcac atgagcgcaa tgcatgaact 
001321 tgatgacaat aaatgatggc aatcttgggc agtgaggtcc cgaatcccaa tgctaatgtg 
001381 caagcatatc ttttttgtct gcacaggttt gcttgatctc cgcaactctg cctcacgaga 
001441 tcttggaaat gaccagcaag ttcatgactg atccagttcg gatccttgtg aagcgtgatg 
001501 aattgactct agaggtaaat atcatcactt gtttttctta tcagtttgat gatcttcaat 
001561 atgtatttta ctttgttggt tctattgatc tttaaatata ttcgtctttc catatcatgt 
001621 ttgtagggca tcaaacaatt ctttgttgct gttgagaaag aagaatggaa gtttgacacg 
001681 ctttgtgatc tttatgatac actgacaatc acccaagctg tcattttctg caacacaaag 
001741 agaaaggtga tatatagttt tcttttttgt tatggtcgtt tcactggtac tctattattg 
001801 ttttataaag tctgctccct ctgttatttg tctacaccaa attattttgc tatcctatgg 
001861 tcatagcttc tttgtagctt tttcaaacac ctcttttttg tgccatctag gcagtgggca 
001921 ttactccttg tccttgtctt tctgaacttg ttgattatgg ttagaatact tgttcatgca 
001981 agcacatgag ttgatatttt ctgtttgcta tttccttact atgttgaatt gcaatgtttt 
002041 ctaactatgc tgacttgtca ttactgatgt tttgctcgat atcctggggt ttactttggt 
002101 caggttgatt ggcttacgga aagaatgcgc agcaataact tcacagtatc agctatgcat 
002161 ggcgacatgc ctcaaaagga aagggatgcc attatgggtg aattcaggtc tggtgcaacc 
002221 cgtgttctaa tcacgacaga tgtgtgggct cgaggcctcg atgttcagca ggcaagttta 
002281 ttgtaatgtt ttgtttgaag actattgatt ttatcgtgtg tggagtactg attaagtgat 
002341 tattatttca tttattttca ggtctctctt gtcataaatt atgatctccc aaataatcgt 
002401 gaactttaca tccatcgcat tggtcgctct ggacgttttg gtcgcaaggt aatactgcac 
002461 aacttgcaac tctttattct aactaaatct atcctctact ttgtttgcga gttattcata 
002521 acaagggaat tttggttcaa gttttgttgg tactaacaca tgtaccatgg ttttgctcaa 
002581 cacaattgca cattcgccaa taatcatgtt gataataatg aatcaaatgc ttgcacattt 
002641 tgttttggca gtatatgaca aatcagagaa caagaattct gatttcatac tgttcacaca 
002701 gaatgaaata ttgaggagcc gctacacttt tttttttttg ctaaagaatg gcacgtggtt 
002761 aaaaaattgt tggcctatga catgtgatgc attatgttag tgttttgtgg caagccaatc 
002821 gtgtgataac aagccaaaca ctaggctaag ttggtaaacc tccttaccaa agatgtggta 
002881 aagtgtggct accaaccaaa cacctgtgta ctccagtaaa ccgaacagct gaccacattt 
002941 atctagattc tagaaacaac taaacaatat ttactctgaa ttccaaatgt tccgtgagat 
003001 tgaggaaaat gatttcgaga cagatccatg tcctggcatt agaaatcatt tgattgggct 
003061 gatgctaaag accaaaaaca ttttccttgc atgatgtagg gtgtggccat caattttgtc 
003121 aaaaaggaag acatccgtat cctgagagat atcgagcagt actacagcac gcagattgat 
003181 gaaatgccaa tgaatgttgc tgatctaatt tgagtgctgg agtggcgcta ccatgtttga 
003241 tcatctggtc tggcaacaac tgagcttgtt tgttgtgatt ttggttgaca tgctttgccg 
003301 tgactgtatt gctatggact ttaaagggtt gcgagtctaa tactagtgat tggtttcgtt 
003361 cccctctctt gtgacatgat ctgtatataa ttttagtgcc agctcatgta acactatgat 
003421 tgcatttctg ctcagaacat gagacttgtt cgttatattt attgccacaa ggatttgatg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ451673 baak34p14 662
more... (Total Hit Count: 10 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ290780 whsl20d12 695
more... (Total Hit Count: 43 )
/rice/oryzabase