cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK059844     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0100700 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 26,143 -  27,602  ( + ) ;   1,460(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,143 -  26,292 ( + ) ;   150 (bp)
Exon 2 Location 26,370 -  26,641 ( + ) ;   272 (bp)
Exon 3 Location 27,090 -  27,293 ( + ) ;   204 (bp)
Exon 4 Location 27,365 -  27,602 ( + ) ;   238 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0100700 Os01t0100700-01 101926 006206E02 6968 LOC_Os01g01060.1 AK059844 37310 AK059844.1 32969862 BAG87164.1 215765467 NC_008394.4 297598437 NM_001048273.1 115433959 NP_001041738.1 115433960


Chromosome: 1 ,  position: 26,143 - 27,602 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcgactcgtt aggctactcc acccactctt gtttagggtt tccctcagcc gccgccgccg 
000061 catccacgct cagcagccat ggcggtggtc gagcagccgc agcagcaggt ggtgaagctc 
000121 ttcaactgct ggtccttcga agacgttcag gtttgcctgt cctcccatta tactagtaag 
000181 caagtagggg tactcgtctg gtctgtcgat aactctcgtt ggcgcaggtg aacgacatat 
000241 ccctcgccga ctacctcgcg gtgtcctcga cgaagcacgc cacctacctg ccgcacacgg 
000301 ctggccgcta ctcggcgaag cgcttccgca aggcgcagtg ccccctcgtg gagcgcctca 
000361 ccaactccct catgatgcac ggccgcaaca acggcaagaa gatcatggct gtccgcatcg 
000421 tcaagcacgc catggagatc atccacctcc tcaccgacgc caaccccatc caggtcatcg 
000481 tagatgccat catcaacagg taccaccgtc caattcccaa ttcctttcag ttgcgcactt 
000541 caattgtcca attcactttt ttttcaatca ccctcaccct cttatatgca aatgcttatc 
000601 actgtccaat cacccccacc ctcactctta tatgcaaatg ctcataactg tagtattttt 
000661 tttcttttta caaatacttc tatcccaaaa tacactcctc tattttgccc gtgcaattaa 
000721 tgttatctta ctagccaaaa atcaagacgg gaatatatat atatatatat atatatatat 
000781 atatatatat atatatatat atatatatat atatatatat atatatatat attgtttggt 
000841 acgagtagta catacgaaaa tgtttgtgtt acatgtctaa tgtgacaatt tactactatc 
000901 actgaatgaa atgaacacaa ataaacaagc atgattgttg ttcacagcgg cccgcgtgag 
000961 gacgcaaccc gtatcggctc tgctggcgct gtgaggaggc aggctgtgga tatctctccc 
001021 ttgaggaggg tcaaccaggc aatctacctc ctcaccactg gcgccaggga gagtgccttt 
001081 aggaacatca agaccattgc tgagtgcctt gctgatgagc tcatcaatgc cgccaagggc 
001141 tcatccaaca ggtaaatctt gcttctcatt tgatgaaatg aggctactga cacatccatg 
001201 ctctaattct gatatgttac agctatgcca tcaagaagaa ggatgagatt gagcgtgttg 
001261 ccaaggcgaa ccgttgagtg ctgaacccat ctcagtgtgc tcgagctatt gccttgcact 
001321 gttgccagta ctttttgcta gtctttttgg gctttgccag agttacctgt gattttctgt 
001381 ttaatgataa gtgctgagaa aatgtagtag tctgttcgct atcgacattg ttttattaca 
001441 cccccaatcc ttgttcctgc 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250121 FLbaf69p21 877
more... (Total Hit Count: 43 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ228877 rwhdl8k06 721
more... (Total Hit Count: 620 )
/rice/oryzabase