cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105132     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0701700 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 30,415,994 -  30,417,166  ( - );   1,173(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,415,994 -  30,416,372 ( - );   379 (bp)
Exon 2 Location 30,416,665 -  30,416,886 ( - );   222 (bp)
Exon 3 Location 30,417,000 -  30,417,166 ( - );   167 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os06g0701700 Os06t0701700-02 001101G04 107980 001101G04 15622 LOC_Os06g48810.1 AK105132 34797 Q0D9S3 HKT1_ORYSJ


Chromosome: 6 ,  position: 30,415,994 - 30,417,166 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ttgttcggtg ctgtcgactg gaattcttca gtctttgatg gactcagctc ttaccagaag 
000061 attatcaatg cattgttcat ggcagtgaac gcaaggcact cgggggagaa ctccatcgac 
000121 tgctcactca tcgcccctgc tgttctagta ctgttcatca tcttaatgtt agttcatgac 
000181 acctcatcta tttatgtttc atgtcatcca actaatactg ttagcttcag ccttcaggtg 
000241 atgacatatt tgtctgaaac tttactttct tggttttcag gtacttacca ccatcgacaa 
000301 catttgcact gtccaatgga gatgaaaaaa ctgcaaataa gaaagcgaaa agaaaattag 
000361 gtttagtggt gcagaacttg gcattttcac agcttgcctg catctcagtc tttgtgatag 
000421 ttgcattcat cactgagagg agtcgtctca gaaatgatcc actcaacttc tctgctctga 
000481 acatgatatt tgaaatcatc aggtgtgttc ctctctcttg attatgcaat caaaattctc 
000541 gtatcaatct gctaagttac actgggcatc aagccaatga tattgtaggc aaaataaaaa 
000601 caacgaaaca cgataaaata ataaacttca ttagcaaagc aagccaagta gtaagatcca 
000661 catctgacac ctcagaatct ttcagaagac aagaaaacta acccaaacat agattgttct 
000721 caacaagata actattttgt actattctgt ctttctaaaa gagtatgcct gttctttctt 
000781 tttttttttt gcagtgcata tgggaatgta gggctatcca ctggttacag ctgttcgagg 
000841 ttgcagaaac tgcacccggg gagcatctgc caggacaagc cgtacagctt gtccggatgg 
000901 tggagtgatg aaggaaagtt gctgctagtc tttgtgatgc tctatggaag gctcaaggcc 
000961 ttcacaaaag gtacaggtga atattggagg ctatggtaaa agctgaagcc tgaacaaaag 
001021 cacttgcaaa ggcaagtgca tcaagtgcag tatatgtaac tatttagagt tctgcctgaa 
001081 agttcaggtt tctaattggg ccatagtgta taaaaataca cccaatatta ttcctcttaa 
001141 tacagtggtg cgcaatcctt tagcgtattc ccg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252071 FLbaf146c01 2140 view details
/rice/oryzabase