cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103067     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0216300 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 5,917,168 -  5,918,686  ( - );   1,519(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 5,917,168 -  5,918,686 ( - );   1,519 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os06g0216300 Os06t0216300-01 J033117P12 213915 J033117P12 7635 LOC_Os06g11290.1 AK103067 37537 Q84QK0 OPR1_ORYSJ


Chromosome: 6 ,  position: 5,917,168 - 5,918,686 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agagcaacaa agaacagagc agagcagagc agcagcagca agaaacagag agagaagcag 
000061 agcaatttcg atcgagaaga accaaagcta ctcctaagcc aaagatggtg cacgcaccgg 
000121 cgaaagtggc agctgcggcg gcgatcccgc tgctgacgcc gtacaagatg gggcagctgg 
000181 agctctccca ccgtgtggtg ctcgcgccgc tcacgcggtg ccgctcctac ggcaacgtgc 
000241 cgcagccgca cgcggcggtg tactactcgc agcgggcgac caggggcggc ctcctcatcg 
000301 cggaggccac cgacatctcc cccaccgcgc agggctaccc ggagaccccc ggcatctaca 
000361 cgcagcagca gatcgaggcg tggaagccca tcgtcgacgc cgtccaccgc aagggcgccc 
000421 tcttcttcct gcagatatgg cacgtcggca gggtctccac cacaggttcg tccatctgcc 
000481 agattattta cttgctagtt gttactactt ggttactgat tgattcgaag aatcaaaggt 
000541 cattgtgctc tttgattgat taaatttcca aatgaaatcg acagatttcc agccgaatgg 
000601 acaggcgccg atctcaagca ccgacaagca gatcacaccg gacgattcag gcatggtgta 
000661 ctccaagccc cggcggctcc ggacggatga gatccctcag atcatcgacg acttcaggcg 
000721 agccgcgcgg aacgccatcg aggcggggtt cgacggcgtg gagattcatg gcgcgcacgg 
000781 ctacctcctg gagcagttca tgaaggacag cgccaacgac cgcaccgacg agtacggtgg 
000841 cagcctcgag aaccggtgcc gcttcgccgt cgaggtgatc gacgccgtcg tcgccgaggt 
000901 gggagctcac cgtgtcggaa tcagattatc gccgttcgtc gacttcatgg actgcttcga 
000961 ctccgacccg gtggctctcg gctcatacat ggtgcagcaa ctcaacaagc acccagggtt 
001021 tctctactgc cacatggtgg agccaagaat ggccataatc gaaggacgaa ggaagatcgc 
001081 ccatggcctc ctaccattca ggaagcagtt caatggcact ttcatcgctg ctggcgggta 
001141 tgaccgggag gaagggaaca aggtggtggc tgatggctat gccgatctcg tcgcctatgg 
001201 gaggctcttc ttggctaacc ctgacttgcc gaggaggttt gagcttgacg caccattgaa 
001261 caggtatgac aggtctacct tttatacaca ggatcccgtt gttggctata cagattaccc 
001321 ttttcttgag gagattgatg aggagtcaag aactacttat gcttaattgt cacctaaata 
001381 atccaatttt agcctattat ttggattaat aatgtaacac ttatcatgtg atacggacaa 
001441 gcatgaatac atttttttgt tgtaagtttg tagctgttga ttcgagatta atgagctaat 
001501 gtaatattga tattgttcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY844982 bart13d06 590
more... (Total Hit Count: 52 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ690417 whrd20h07 734
more... (Total Hit Count: 31 )
/rice/oryzabase