cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK102270     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0606000 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 24,915,962 -  24,921,788  ( - );   5,827(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,915,962 -  24,916,512 ( - );   551 (bp)
Exon 2 Location 24,916,722 -  24,916,796 ( - );   75 (bp)
Exon 3 Location 24,916,900 -  24,916,956 ( - );   57 (bp)
Exon 4 Location 24,917,040 -  24,917,156 ( - );   117 (bp)
Exon 5 Location 24,917,941 -  24,918,060 ( - );   120 (bp)
Exon 6 Location 24,918,146 -  24,918,268 ( - );   123 (bp)
Exon 7 Location 24,918,622 -  24,918,711 ( - );   90 (bp)
Exon 8 Location 24,918,839 -  24,918,964 ( - );   126 (bp)
Exon 9 Location 24,919,464 -  24,919,517 ( - );   54 (bp)
Exon 10 Location 24,919,602 -  24,919,676 ( - );   75 (bp)
Exon 11 Location 24,919,770 -  24,919,877 ( - );   108 (bp)
Exon 12 Location 24,920,136 -  24,920,207 ( - );   72 (bp)
Exon 13 Location 24,920,328 -  24,920,390 ( - );   63 (bp)
Exon 14 Location 24,921,505 -  24,921,788 ( - );   284 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0606000 Os06t0606000-01 J033088P20 213117 J033088P20 14755 LOC_Os06g40370.1 AK102270 32746 AP008212.2 255676632 BAF19938.1 113596064 NC_008399.2 297606578 NM_001064559.1 115468849 NP_001058024.1 115468850 Q69Q47 CIPKO_ORYSJ


Chromosome: 6 ,  position: 24,915,962 - 24,921,788 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attcaggcag cgaagccccc ccaaagccga gctcgcgcgc ggcggcgtcg tcgtcttcct 
000061 cctcttcccc ccgagttgga ttcgtggccg cgcggcggat gggaggggag gagggaatgg 
000121 cggcggggag gaagaagcgg gtggggaggt acgaggttgg gcggaccatc gggcagggga 
000181 cgttcgccaa ggtcaagttc gccgtggacg ccgacaccgg cgccgccgtc gccatgaagg 
000241 tgctcgacaa ggacaccatc ctcaaccacc gcatgctcca ccaggtaatt cccccgcttc 
000301 tcctttcccg ctaccctcca catccgcccc cgccagtgca cgagtccaaa tcaaactcct 
000361 cgcactcccc cctttgcttt gatccgggcg attcttttta cacttttttt tatttgggtg 
000421 ctctccgctg ctgctttgct gtttgccaaa tggtgagcag ccgcgcatcg acgagggcgg 
000481 atggagaatt tccgaatata cctcgacagc aatgcgcacc actggttaat tcgtgcgagt 
000541 tgcgcgcagc tcttgccgtt tgatgattaa gaataaggaa ttaactggag agccttaaat 
000601 ttcttgttct cccaaagggg aaaatacctt ttttttaaaa aaaaaaaaga aaagaaagaa 
000661 aaacttaatt cgagcggttt gtttggtgtt tcatctcgtt tgggctgaca gaagctcagt 
000721 tgcagaattg aaatggttgg gtgttgaaag tgattttacc aaaatttggt ctgttgtagc 
000781 ttaattcgat ttgcggtgtt tgcagaaatg ctacaaatag ttggttcata tggttatcca 
000841 acgacatctt ttgaggatgc atcttgttgc aaagtgctca agttctctaa ttatagtggt 
000901 gtaaatcttt tcctaagctt cctgatttgc tagttgctat ggaacttggt ttctctccaa 
000961 ttgtgtttgc aattgcaagt atatatttgg tttgtttaat ataactgttc tataatccta 
001021 agcctactgc tatgccatga agcttggttt ctctccaatt gtgtttgcaa ttgcaagtat 
001081 atatttggtt tgtttaatat aactgttcta caatcctaag cctactgctt tgccatgaag 
001141 cttagtttct ccccaattgt gtttgcaatt tcatgtgtat aaatttggtt tgtttagttt 
001201 aactgttctg caaatcaatg atgaccacca gttttacctg attttgctgt gagcacccat 
001261 ttcagatttc cagtttatgc gagatgtact ttctttgtgt tgtttatgca atatcgctaa 
001321 tcatgataac aaaaaaaagg actaaaccat tctaattcgg cattagatta cgaactcact 
001381 tctcatgtta cttgacagat caaaagggag atatcaataa tgaagattgt aagacacccc 
001441 aatatagtta gactaaacga ggtatgctaa atatttactt gccatctgtc ctatataact 
001501 tttcattatt aacaaaactc ctatgttggc tatcttaact tcctgtgtca ctactttgtt 
001561 accattacta tgattttgta ggttctagct ggaaagacga agatatacat aatcttggag 
001621 cttatcactg gaggcgaatt gttcgataaa atagtaagga gtctattata tacactaccg 
001681 aaataacgat gagctgctgt tctacttgaa ctaaaaaaat ataagaattg tgccaatctg 
001741 gcagtgtctc catatgtaaa ttctttttat cacccatata taccagaaac tttctgttca 
001801 gtaaattata ggcccattat ataatcccaa taggcaatat aaagaaagga acattttttt 
001861 attattgtgc attttcttaa aatatgaacc tatgcgatca aatatctgta ggctcgccaa 
001921 gggaagcttc gtgaaaatga agcaaggaag tacttccagc agcttattga tgccatcaat 
001981 tattgccata gcaaaggagt atatcataga gatttgaagg tccgttactg ataagagaca 
002041 cttggctatc atttgtccta ttcactaggt gcaatatctc atgcttaccc tttttttggg 
002101 catgttatgt agcctgaaaa cctgcttctt gactcacgtg gaaacttgaa agtttctgat 
002161 tttggactta gcactttggc ccagaaagta agctcagtaa ttgcttttaa tgatgctgta 
002221 tttctatcct agaagtgttc tgattgggat ttcttttttg agggatttca gggagtaggc 
002281 cttcttcaca caacttgtgg aacaccaaat tatgttgctc ctgaggtatg atgctctctc 
002341 tctctctatc tctcaatgca tggtaaattg aactgtacga aatgtttttt ttttggcaag 
002401 gagctaattg attagctaca ctacatgcaa gaaatatgtc tgcaaaatta gacgagttac 
002461 tcgggatgca attcaatttt cctagatttt ctttatagat catatttgta tgtatgatac 
002521 aaatgtctgt tagactagaa agagattacc tatttctttg tttctctacc tgtctcgcag 
002581 ttatttggtt ggttagttct cttcagggtt ctaaacctca tttttatgca tatttctgcc 
002641 atcatcacta aataaatatc tctagctgtc ttatttcacc atgttcaagc tattgtgatt 
002701 ttaattgtct gaactagttc ataaaattgt gatatgggca tttcaagcca tttccttaga 
002761 caagattagg ggcatttttt tagtacatat atgatatgcg ctttaccatg tgtcaatgtt 
002821 ttaggtgctt agcaacaatg gttatgatgg atctgcagca gatgtttggt catgtggtgt 
002881 tattctctat gttttgatgg ctggatacct tccttttgag gaagatgatc ttccaacact 
002941 gtatgataag gtattggctt cattactaat gtgtgcagca taagtctttc tttccctaaa 
003001 ttgttgatgt gaacacctac ataatcgttc tactcagatg agattgaaac ctgatatgtt 
003061 tactcctaca ttaaaagatt actgcaggtc agttttcatg cccttattgg ttctctccag 
003121 gtgctacatc gcttatccac agaatactcg acccaaatcc aaaaactgta agtacacaca 
003181 ctaggttgtt tcattgcatc ttcaagaaac aaatcatcct ttatagtaaa gtttacctca 
003241 agcttccaaa gtactcttgt caccaattta atacttcagt ctcagtctgc atggctgcag 
003301 aaattatgtg agagaatgca gaaaacaaag actaatttct tcatatcagt gctgccatat 
003361 atgttacaga aatactgtat acaactatac atgaccagtg acagaatctt gctagaatca 
003421 aatctaataa gtctaacgca tagatcttca accagcatag agtgtttgct tttgcaaatt 
003481 gccgtctcca gtttcttagg cctttttcac tattttgcag cgtatcacta ttgaacagat 
003541 aagggaagac acatggttta agaagactta tgtagccatt aaacgtggtg aagatgaaaa 
003601 tgttgatctg gatgatgtac aggctgtttt tgacaatatt gaggtttgtg tatgccattg 
003661 gtatattgcc aattgtctgt cacctatttg cttctatagt tatatttata caacttttct 
003721 ggcttcagga caagtacgtt tctgagcaag tgactcataa tgatggtggc cctcttgtga 
003781 tgaatgcctt cgagatgatt acattatctc aaggtttgga tctttcagca ttatttgata 
003841 gacagcaggt aatttcatag ttccactctt ccttttagtt ggtaacactc ttggtatggt 
003901 tgaccatttt gctgttggag aaccattagc gcaatgaaat ttgaaacgct gatgggttta 
003961 tagtgtacgg agatctggca tgtcagctta tttcatttac ttacaaggct gtgaggcact 
004021 gggtttagtg acggttggtc gctcaggggt ttctatcttg tttataataa atgacttaaa 
004081 cgaacatcca tttcaattgg cgttagtatt atgtggaact atattctagc cactgtatat 
004141 ggattaaccg actgtagatc gatcccattg tctattctct tttcttatcg cttagtgtac 
004201 tggttggtgg cagacggctt ctgttttttg ccaaatttga atggaaatgg aaaccctgca 
004261 taaaaggaga aaaaaacatc tgattgcttg cttcttagct aatctccatg gtttaaattg 
004321 cacctgttta gtttgtgaag tatttgacca caccaaccat atattcattc tagttgcaat 
004381 gttctcgtat agcagaaaga agaacccact tttcaatgtt tgtgctctta cattagatct 
004441 tcctagacat gtttagtatg tattttttta ttttacgtgg accatacgtc atagtgtgcc 
004501 acacgtcatg aataactttg gtgtttgctt tatgcattaa ctgcagtcct catgaataac 
004561 ttatgttgtc tgatgcaact ttcatcacat ggagtgctca tgttgcaata atgatgggtt 
004621 ttatatttgt aggagtttgt caaacgtcaa actcgttttg tctcaaggaa accagcaaag 
004681 actatagtag ctacaattga agttgttgct gagactatgg gtcttaaggt ccactctcag 
004741 aattacaagg taattacaaa acattttctt caacaagcaa ctcatttctt actcttgatg 
004801 taatgatact tattgctaac tcttttctgc agttgcgtct tgaaggtgta tcttcaaaca 
004861 gaatgagccc gtttgctgtt gttctacagg tagtcttaca ttgccctttg ttggggaaca 
004921 acattttgct gtttgtcatt cacaaactac atttttcatg ctgtcttatg ctttgaaatg 
004981 catcattcgc aggttttcga agttgctcct tctctgttca tggttgatgt tcgaaaggtt 
005041 gctggtgaca cactggaata ccacagggtc tgtctttcca catatcgtct tgtatcctaa 
005101 tcgaatatag tagcatgatt gcctagacta gttcataaat ctaaaaaaat gactgacact 
005161 gcctgactga cactgataac tttcacacaa tgtgtcaaaa tgctcattcg aaggtgcaac 
005221 atccaacttt tcgtccatcc ggaacgattg ctaactcaga tttacactca ttgcagttct 
005281 acaagaactt gtgcaacaag atggaaagca taatctggag accgattgaa gtttcagcga 
005341 aatccgcact gctgaggaca gccacatgct agcctggcgc taacgcagct gcaactcctg 
005401 catcagtggg attttcaggt tttcaggttg tcaactccta gcccgtccac cgaagttgct 
005461 cttgcaggcg ctgcatgtac cacatagctg agtcagttct tcagtagatc agtgtaccat 
005521 tctagtttca tgcaccagat gttttggtag tattgttaat atagaactgt agatagtcca 
005581 tatagcggcc aattgtgcag tctgtatgta acatggatat agataggttt cttgtgtagt 
005641 agtagtaaat aagctggtta ttttgctgcc atgaaactgg aatgacttgt gaacgtcgaa 
005701 atgctctcgt gtatgtcgga tcttcttcac ttagccgttc tcaaggatga gagcaattaa 
005761 tcttgtgata taatcctata tgtatttcca gggcagaaat ggaaaagaaa agggaaacct 
005821 gcctacc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK249057 FLbaf16f01 1030 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ246118 whf21i21 695
more... (Total Hit Count: 3 )
/rice/oryzabase