cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101978     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0229800 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 6,747,399 -  6,752,303  ( + ) ;   4,905(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,747,399 -  6,747,891 ( + ) ;   493 (bp)
Exon 2 Location 6,748,021 -  6,748,689 ( + ) ;   669 (bp)
Exon 3 Location 6,748,789 -  6,748,857 ( + ) ;   69 (bp)
Exon 4 Location 6,749,547 -  6,749,624 ( + ) ;   78 (bp)
Exon 5 Location 6,749,707 -  6,749,817 ( + ) ;   111 (bp)
Exon 6 Location 6,749,923 -  6,749,967 ( + ) ;   45 (bp)
Exon 7 Location 6,750,384 -  6,750,557 ( + ) ;   174 (bp)
Exon 8 Location 6,751,025 -  6,752,303 ( + ) ;   1,279 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0229800 Os06t0229800-01 J033076P09 212824 J033076P09 1772 LOC_Os06g12450.1 AK101978 30443 AK101978.1 32987187 BAG95322.1 215678885 NC_008399.2 297606578 NM_001063751.1 115467233 NP_001057216.1 115467234 Q0DDE3 SSY23_ORYSJ


Chromosome: 6 ,  position: 6,747,399 - 6,752,303 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtgccctcct cgccgtcgtc gctcgctgcc catttcatcc cccgcacggc acgcgcggga 
000061 cgaaagcaaa gcacgcgcac acactcaaac ccgcgcctcc tccgctctcg tccgtcgctt 
000121 cggttcggtt ccggctcgat cggggaggtt cctcggggcg accatgtcgt cggccgtcgt 
000181 cgcgtcatcc accacgttcc tcgtcgcgct cgcctcttcg gcgtcacggg gagggcccag 
000241 gagggggagg gtggtgggcg tggccgcgcc gccggccctg ctttacgacg gccgcgccgg 
000301 aaggctagcc ctacgggcgc cgcctccgcc ccggcctcgg cctcggcgtc gggatgcggg 
000361 cgtggtgcgc cgcgcggatg atggggagaa cgaggcggcg gtggagcggg cgggtgagga 
000421 cgacgacgag gaggaggagt tctcttcggg cgcgtggcag ccgccccgct cgcgtcgcgg 
000481 cggcgtcggc aaggtgggtt ggtggtgtcg atcggggcgc cgagatcgtc gtgctcgaga 
000541 ggtgttctct gctttgattc gctttgatgt tttcatttga aaccgacgcg tgtgcttgcg 
000601 cgtgcgcgcg ctgtgtttgc aggtcttgaa gcggaggggc accgtcccgc ccgtcggccg 
000661 gtacggctcc ggcggtgatg cggcgagagt gcgcggggcg gccgcgccgg cgccggcgcc 
000721 gacacaggac gccgcctcaa gtaagaacgg agcgcttctc agcggccgcg acgacgacac 
000781 acctgcctca cggaacggat cggtcgttac cggcgccgac aagcctgccg ccgccacgcc 
000841 gccggtgacc ataacgaagc tcccagcgcc ggactccccc gtgatccttc catccgtaga 
000901 caagccgcag ccggagttcg tcatcccaga cgcgacggcg ccggcgccgc caccgcccgg 
000961 ttcaaatccc aggtcgtccg ctcctctccc caagcctgac aattcggaat ttgcagagga 
001021 taagagcgca aaagttgttg agagtgctcc gaagccaaag gcgactagat cttcccctat 
001081 tcctgcggta gaagaggaga cgtgggattt caagaaatat tttgatctga acgaaccgga 
001141 cgccgcggag gatggcgatg acgatgatga ctgggctgat tcagatgcgt cagattctga 
001201 gatcgaccag gatgacgatt cgggcccttt ggctggggag aatgtcatga acgtgatcgt 
001261 ggtggctgct gaatgttctc cctggtgcaa aacaggcatg tacacgatat atacttcttt 
001321 tttctctttt ttgttcttct gatcttgtaa atttgcttca gttactgata tgaacaagtg 
001381 ttgcatttgc acaggtgggc ttggagatgt tgcaggtgct ttacccaaag ctttggcgag 
001441 gagaggacat cgtgttatgg tattactcct tttttctctc cttcatggtt ggatgtttct 
001501 tccattctta cagatttgat catttaatta acgtatattt tcagatatat aaatttggat 
001561 caaatgtaaa gcagattagt tctcttatgt tcttttgttt acataatcat gatggcaaat 
001621 taaaaaggct actccagctg ttagattcaa aatacaaaag taatattgat aaatttgcaa 
001681 atctgtactt gaaagctaaa ttgcttacta ttgttacaga aatgttcatt tctaacatgc 
001741 tgttgaaaat atatacacta tggcgtagcc gcttagatca tcacgtggcc atggaaacta 
001801 gtgccaaaag tagttctctt agttacacta gttacatacc tgtacatgat aacggatcag 
001861 gcccatacaa ttagggatag attaggagcc cgttaacgaa ctaggccctt ataattaggg 
001921 agggacggta gttacttttc gcatatggac atgctgcacg tgttgggagg aggggatgga 
001981 aggaagacga cttcgctttt aagatagtag agaaatgtag caattttttt tagcaatttt 
002041 agttatggta ataatataaa ccacaacgta ttcagagatc ggaaacgggg actctcggtg 
002101 acttcctgat ataaactgat aactggcaaa tgcatctttc aatcttaggt tgtggtacca 
002161 aggtacggtg attacgcgga agcccaggat gtaggaatca ggaaatacta caaggctgct 
002221 ggacaggtgt gtgtcaacaa tgcaatccaa gaagactggc ataggagacg caaattcctt 
002281 agtaattggt ttttattttg gcctgcagga tctggaagtg aaatatttcc atgcatttat 
002341 cgatggagtt gattttgtgt tcattgacgc tcctctcttc cgtcaccgtc aggatgacat 
002401 ctatgggggg aacagacagg tgaagcttct atctgtttgg tattacattg cattagtaaa 
002461 acttaagttg catctcctag gcgtactgat ttgaaaatgc ttacccattc ccattttcat 
002521 tcaggaaatc atgaagcgca tgattctgtt ttgtaaggct gctgttgagg tattttctcc 
002581 aactccatta tcaatcatta atttggtttt aggaatgaga tgtatttgtt tggtttgagg 
002641 attggtcaaa agcacaaatc attttttctg ttgataaata gaagaagtgt attaactttt 
002701 ggactgaagc acacaataag taggagaaat gaggtcgcag tagatgattt gaatttgatc 
002761 cctcaaacaa acagcccgta aatgtttctg caagatttca cagagattca tattcttttt 
002821 tattttaaat atattacaca ttatcgccaa atacacggat gaactccttc gatacctcta 
002881 gcagcatttc aacctgctac cgttcgtaat atgcaatgct cttgccaatg ttgtcatatg 
002941 ttcccctaca aagggctata ttttctgttt ctgtacaatc ggcaggttcc ttggcacgtt 
003001 ccatgcggtg gtgtgcccta tggggatggc aacttggtgt tccttgcaaa cgattggcac 
003061 actgcactcc tgcctgttta tctgaaggca tattacagag acaatggcat gatgcagtac 
003121 actcgctctg tccttgtgat acataatatc gcttaccagg ttttgttttt ctctcctccc 
003181 taatgaatca tctttattct atttgtatgc atctcctgct gtttgttaga gaaattagtt 
003241 gagtgcacaa attgtgggtc atggtaatta ttgagcaggg acacgataaa ctcttcttca 
003301 gtctattact acttttagtt cagcaatttc tccgtttcat attataattt ataagtcgtt 
003361 ttttttctaa tcaaacatct ttacgtttga ttaactttat cgaaaaattt aacagcatct 
003421 ataacatcaa attagtttaa ttaaatataa tgtttaatgt aatttgatta tatgtttgtt 
003481 ttgtattgga aatgttattg tatttttcta taaactaatt aaatttaaaa ctgtttaact 
003541 taaaaaaata tcaaaacaat ttacaatatg aaacgggccg gggagtactt tttttgtgtg 
003601 ctaaatggtt cgtgtaatgt ttgtagggcc gtggcccagt agatgaattc ccctacatgg 
003661 aattgccgga gcactacctg gatcacttca agctgtacga ccccgtcggc ggcgagcacg 
003721 ccaacatctt cggcgcgggc ctgaagatgg cggaccgggt ggtgaccgtg agccccggct 
003781 acctctggga gctgaagacg acggagggcg gctggggcct ccacgacatc atacgggaga 
003841 acgactggaa gatgaacggc atcgtgaacg gcatcgacta ccgggagtgg aacccggagg 
003901 tggacgtgca cctgcagtcc gacggctacg ccaactacac cgtggcctcg ctggactcca 
003961 gcaagccgcg gtgcaaggcg gcgctgcagc gcgagctggg gctggaggtg cgcgacgacg 
004021 tgccgctgat cgggttcatc gggcggctcg acgggcagaa aggtgtggac atcatcggcg 
004081 acgcgatgcc gtggatcgcc gggcaggacg tgcagctggt gctgctgggc tccggccgcc 
004141 gcgacctgga ggtgatgctg cagcggttcg aggcgcagca caacagcaag gtgcgcgggt 
004201 gggtggggtt ctcggtgaag atggcgcacc ggatcacggc gggcgccgac gtgctggtca 
004261 tgccgtcgcg gttcgagccg tgcggcctca accagctcta cgccatggcg tacggcaccg 
004321 tccccgtcgt gcacgccgtc ggcgggctga gggacaccat gtcggcgttc gacccgttcg 
004381 aggacaccgg cctcgggtgg acgttcgacc gcgccgagcc gcacaagctc atcgaggcgc 
004441 tcggccactg cctcgagacg taccgcaagt acaaggagag ctggaggggg ctccaggtgc 
004501 gcggcatgtc gcaggacctc agctgggacc acgccgccga gctctacgag gaggtccttg 
004561 tcaaggccaa gtaccaatgg tgaagagacc atgtccgccc gcggtctccg cctgcgcgtt 
004621 cggcagctat agctatagcc tccctgaaga agcttggcgc tgctgtggag gtgcgactcg 
004681 gtggcggtgt ggcgccggcg ccggcgcttg caggggaggt gtttgtgctg accgagctgt 
004741 gcgttgaggt gcgcaaatta gcttccggtt tgtgtgttca tggcgaggca tggtggagtt 
004801 gagggagtat taagctttgt ttcagatgca tcatgcatgc gtaataggat gttgtattta 
004861 ataatgtgtt tgttatgtcc attgatgcga tgttacttct tcatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY853151 bast65e10 448 view details
/rice/oryzabase