cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK101165     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0183100 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 4,136,853 -  4,141,662  ( + ) ;   4,810(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,136,853 -  4,137,285 ( + ) ;   433 (bp)
Exon 2 Location 4,137,578 -  4,137,730 ( + ) ;   153 (bp)
Exon 3 Location 4,137,866 -  4,138,279 ( + ) ;   414 (bp)
Exon 4 Location 4,138,402 -  4,138,478 ( + ) ;   77 (bp)
Exon 5 Location 4,139,663 -  4,140,883 ( + ) ;   1,221 (bp)
Exon 6 Location 4,141,241 -  4,141,662 ( + ) ;   422 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Os06g0183100 Os06t0183100-02 212007 J033028D10 11658 LOC_Os06g08440.1 AK101165 21678


Chromosome: 6 ,  position: 4,136,853 - 4,141,662 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 attaggcttt ggattttcct ctcgtgttct ttagtctcag cctattagag gtttgaggaa 
000061 agttttccat ttcttagctc tttttgcttc cagcttcttg ggattgctct gtttcttgct 
000121 gagaattggc tcgatttggg aggcctcatc ttgtgttagc tttcaggttt tcttgcctga 
000181 aattgaaccg attgggtagg tttttaggtg cttcagtttc agttgctagc tcgtcaggct 
000241 tgttcttggg ctcctgcctt gaattggggt caaattggga tgcttctggg tgctttgagg 
000301 atggaggaga ggaagggatt gatggggagg gagagggatc aattccccgt cggcatgcgg 
000361 gtcctcgccg tcgacgatga cccggtgtgc ctcaaggttc ttgagaccct cctccggcgc 
000421 tgccaatacc atggtcagta tttacagtaa ccgcagctaa ttgtacttcc attatcagct 
000481 atccatgatg ctcaacttgc tggttttttt gttcgattct gcatgttaat gacagtgttg 
000541 ttcttttgct tctgcttgca ttgttcattg ttgtattgga gtactgtagt tttcttagaa 
000601 atctgaaatg tcactgatac tagcatactt ggcacatttt agaacttctg tatatcttat 
000661 aaatgcaatg caatatgcct actatggtgc actgataaga gctctcttat ggtgattttt 
000721 aacagtaaca tcaaccaacc aggctattac tgcgttgaag ctgctcaggg agaacaggga 
000781 catgtttgat cttgtcatca gtgatgtcca catgcccgac atggacggat ttaagctcct 
000841 tgagcttgtg gggcttgaaa tggatctccc agtcatcagt aagttcagat tttcattttt 
000901 tccccttagt acaaacaaag ttctagatag gaaggatcag ctgttgtgta aaaatgtctt 
000961 agctgaattt gagcaaaaga aatggagatg ctaatcgggt ataatgcctg cagtgttatc 
001021 agtaaatgga gagacaaaga ctgtgatgaa ggggataact catggtgcct gtgactatct 
001081 tctaaaaccg gtccgaatcg aagaactaag gaacatatgg cagcatgttg ttaggaggaa 
001141 gttcggtaat cgtgagcgaa acaatcttga tttctccaaa gaatgcaata agccgcaaag 
001201 cgcggatact gatcatggac cataccaacc tacctgtggt tcttctgatc aaaatgggag 
001261 gtccagcagg aaaaggaaag aactacacgg cgaggacgac gatgaaggcg atgataatga 
001321 ttatcaagaa aatgatgagc cctcagctgc aaagaagccc agagttgtat ggtcagttga 
001381 gctgcaccga aaatttgttg ccgctgtcaa ccagcttgga attgacagta agaaagcacc 
001441 cccccccccc accccacttt tttgcctttc tgtaaatgtc cttgcaggtt tgcagcaaac 
001501 tcatttatgt ttgtgtcctt tttttttttt tacctcactg ttgatgcaga agctgtacca 
001561 aaaagaattc ttgagcttat gaatgtggag aaactcacca gggaaaatgt tgcaagtcat 
001621 ctacaggtat agcatttact tccatgacaa aattatctgg gtgccttttt tttttctttt 
001681 ctttttatcc attcatgaga gctcttgaat tttgctcaac cgtcatcctt tacatgttct 
001741 tctgtacctt cagttgttga tgcgttttta cttcagttta tgaggtcgtc catcattcat 
001801 tcattcatca ggcctgcaca aagtgacaga aaatctctta tcattataca tgttgcaaat 
001861 gctgatgctg cacagcatcg agaattcaag attccaccac atggttgtct gaactctgaa 
001921 aaactcacca ttttatcaca tcatttactc aacctgcaca gaaatgtagt acaacaaact 
001981 tcagatcagg attgatccac acagactgca cattttcttc cctgatgcaa aattatcatc 
002041 gatcccgatg aacaccatcg aatcaaagct tcatccacca tttgatttca tcaatgaaat 
002101 ggaggagtct gcacctgagc acacacggcc acacagcata tgtagctggg tagaccttca 
002161 ctctaccaga gtaagcgatc caggcggcct cgatggcgcc gccgcggctc aaactggccg 
002221 gcctcgtcgc tgtggcagcg ggccagctag gggatggcgg cggcgcaggg gctccggcga 
002281 tgggatctga atccaaacag cagagagggt tttggttgag ttgccactga actgaacctg 
002341 catatatttt ggtcatccat atctgaaaaa tgtgcaatac ttcagatgtt tagatcagta 
002401 tttcctccaa attcttgcaa atattttctt cggctcacga aattcttgtt agcattgttg 
002461 gttgtgaagt ggcacaccta taatcatgtt tgaatttgac tcagtctctc atcacctttt 
002521 atttagtgtt gatgcagtaa gagtactaga acagagctga tgtttcctac tactttcatg 
002581 gctagctaga attttatggt gtcatacagg ataaattgaa cgaggttcca ccattttatc 
002641 tttgttgttc atatgcaact agattttatt aaactgttga aatgcaagaa tgtgcaaaca 
002701 tctcgtatga caaatcctaa acaatgtgct atctaaatct gaaaataggt gatttgctgt 
002761 ttaaaaactc aagtccatat ctaatcagtt gattttcatg tgacatgcag aagtacaggc 
002821 tttacctcaa gagactaggt gctgtagcat cacaacaagc cagcattgtt gctgcctttg 
002881 gaggcagaga tccctccttc ttgcatattg gagcatttga aggactccag agctatcaac 
002941 cttttgcacc ttctgctgct cttccatctt tcaatccaca tggcctgcta acccgaacta 
003001 gcgccgccgc ggctttcgga cttcaggagc ttgctgcccc ctccagcaca attcagactt 
003061 ctacaggaaa tgtcacagtt ggccattgct tggaagaaaa ccagcaggca aatctagcac 
003121 aaggcttgac cgcggcgatc gggcaacctc agcttcaaca gaactggatt catcaagaag 
003181 gtaatggtct gtctgatgtt ttttctggga gttctctgac caacactttg tccagcacac 
003241 tccaaagagt tccaagcagt tcattgccac cacaagaact cttggagtgc aaacaagcca 
003301 aagttagcat gccgccatcg atacggatac cgccttctag ttcagcactt cttgagagga 
003361 ctcttggggt ttccaccaat ttgggagatt ctagtatatc ccagcagggt gctcttccaa 
003421 tagatggtgg attttctgct gacaggttac cattgcacag ttcatttgat ggcgctgttg 
003481 caacaaagct agatactagt ttggcagctt cacagagaga gattggccag caggggaaat 
003541 tttcagttag catgcttgtc tccccttctg acaatcttgc attagccaaa aatgccaaaa 
003601 ctggagctag ttcttctggc agtactataa ttctccctct tgatactgca agacattcag 
003661 actacttgca gttcggaggt gcaagcaatt ctttgcagaa aatggatgga cagaaacaag 
003721 atcatataca gagctcaaac attatatgga gttcaatgcc aagcactcaa ctgccaagtg 
003781 atacccaaat tcataatact caaaaccaaa gattggacag cggaagtttt aaccataata 
003841 ttggtgccca tttggctgac caaacaaatg caagtgcgtc aatacttccg caaatgaagt 
003901 ttgacacaag aatatcagaa gagaaaatga agcagaagaa tacatatgac ttgggtagtt 
003961 caaagctgca gggtggattt aattctagtg gctgcaattt tgatggcctt ctcaattcca 
004021 taatcaaagt ggtatgaacc tctaattttc ctttcctttt tccccatata gttttaaata 
004081 tttatctaca tgaatatgct cttccttctc attgagtaat ttaaattgac tccactgtat 
004141 ttaagcacaa agaacaaagg ccactctaaa tattaagctg taaacagttg taacctacac 
004201 ataaacagga tatgcctagc agtacctaat atttgcattt tccatcttgt tttatattat 
004261 agaaatgttc ttgagccaca tttaacttgg ttctaactta tctaatctcc atgggacttt 
004321 accttttgca tatattcttc tgaaagaaat gatggtttac tgaagcctta attctaattc 
004381 caatgcagga gaaggatgat ctcccattca tggacaatga attgggctgt gacctttttc 
004441 cacttggtgc ctgcatatga atccatcatt tcggacacca aagattttgc ataatctaaa 
004501 agagtcagct gtgctgcctg atctgtgcta cttcatccag gctttgtgta tactaggatc 
004561 tagggacagt agtggcttgt aatcttgctt tatctcttct ctagggttgg ctatggaagt 
004621 atggttagat caagataaga agaaaatata atgctgtaat gtcagcgcct tttctagtca 
004681 aaatctgtgt ttgtttctaa ccaagcaacc acatctagtg tttgctgcac cttctcagac 
004741 tgaaaaaata tggaaactca ccatggcata gataaatcaa aagggaagtc tttaaccatc 
004801 caagtttgct 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248322 FLbaf58b24 2552
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ716875 whvd13p14 762
more... (Total Hit Count: 15 )
/rice/oryzabase