cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK100964     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os06g0569900 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 6
RAP - Location, Length 22,925,651 -  22,934,760  ( - );   9,110(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,925,651 -  22,926,111 ( - );   461 (bp)
Exon 2 Location 22,927,900 -  22,928,093 ( - );   194 (bp)
Exon 3 Location 22,928,202 -  22,928,361 ( - );   160 (bp)
Exon 4 Location 22,929,306 -  22,929,560 ( - );   255 (bp)
Exon 5 Location 22,929,644 -  22,929,784 ( - );   141 (bp)
Exon 6 Location 22,929,941 -  22,930,102 ( - );   162 (bp)
Exon 7 Location 22,930,215 -  22,930,375 ( - );   161 (bp)
Exon 8 Location 22,934,562 -  22,934,760 ( - );   199 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os06g0569900 Os06t0569900-01 J023142C08 211806 J023142C08 1610 LOC_Os06g37330.1 AK100964 39914 AP008212.2 255676632 BAF19821.1 113595947 NC_008399.2 297606578 NM_001064442.1 115468615 NP_001057907.1 115468616


Chromosome: 6 ,  position: 22,925,651 - 22,934,760 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 atcaagagaa tgcagtgcaa gtgcaaactc tcgcagtgag cctgtgtgat cgatcgatct 
000061 gagtaggggt cggccatgga gtcgctgctc gcagccggtg cgggagggat cggtgtggcg 
000121 gcggcggccg tcggggggtt tatcgcggcg gcgacactcg ccgtggcacc gcccaagaac 
000181 cgccgcaacc cgcctccagg taaccggccg gccgggcccg ttcgtcgatc gttcgatcga 
000241 tccattgccg tgttttgccg tccgcttcct ggcctgtgga tatatatcta cctatctagc 
000301 ttcattgaaa tgttggagat ggcatgcagc tgatgaccct aattagcgat gaaaatggag 
000361 tggatagttt ctgctacaga agaaaaatga atacggatat cgtgcggagc agataattat 
000421 tggatagttt ttacatatat ttgttttccc ggatgcgaac aagaatatgg tatcagaatt 
000481 tttgtcggat acatatatcg catatctgct gaagacataa aacatatacc atttctctct 
000541 aactcatctt taacatacct ctttagattt tattattaat attatttaaa tttttaaata 
000601 tttttataaa atatactata tttatatatt ataatatcag ttatatatgt atttttacca 
000661 actctgttat acatgcatgt agaacttaat tagcactgtt tagtctatga tcaaccttat 
000721 tatataaaaa gagctaatta tgtgtgttgg tgtttgtttc tattaaatgt ttaggtggtt 
000781 tttgtgttcc gagaaataaa ttcttggtat tcgtgtcgga tatatttgat gattatttgc 
000841 attagagata attcttattt gttttcatat ccgacctatt cggttttgta tctggaaaaa 
000901 aaaatacaaa gatgaatacg gtatgaccct tatctgcata aattataaaa atacaaaatc 
000961 aaaattatct tcataaatta tacaaaaaaa tagaaaaatg tttgtagcaa caaaatcaca 
001021 attatatgca tgtaaattca aatataaatt caatgatatt atttttgtca aataagacat 
001081 aatttataat aaagtattat tggtcaaaat ttaaagaact gaatcttaaa ttgagtgcac 
001141 aacttactaa gtgggacaga gggagtacta cactagctta cccccacggt gtaaatattt 
001201 tttcatcttc gtttttatta aactgacaac ttaaaataat gcaccacttt tgttatagag 
001261 gctataaact tctatattaa ttgaagaaaa agaaaaataa gttcaaatac agaaataaca 
001321 taaatttgaa attaaaacaa gaaattttca aagaaaagtc tatctaaaca taacatgaga 
001381 ttaattaaaa ttgagaataa acaaataaaa gagttcaaat aaaaatataa tttgggaata 
001441 actaaaactc gtaaaaaaga agtactaaaa agaggagtca acctgtaaca caacacgaga 
001501 ttagttatat tcaaaataaa aaaaatataa taaactatat tacaatacta attccaaata 
001561 aaatttaaaa gaatcatgaa aatttgggaa aaaaataaaa ataagtaaga caacatacca 
001621 agaggagtcc atagaatata taataattaa atattcaaag tatgatttaa aaatatagaa 
001681 ataacacgta taaaataaca tttgtgggga aaaagaaaaa agagagtcca ttcggaaata 
001741 cattttatat ataactaaaa ttggatgtaa aagttatgga atattgagag aagtgttggt 
001801 ctaaaacata acacgagatt aattatggtt cgagatgaaa ctatatttat ctataatatt 
001861 attaagatat tcttggaagg agatatcatg tttgcaatgg agactagaat ttacaacatt 
001921 aattgtagaa aaaaaacaaa atctacactg ttagatcatg gtggaaccat attatgttga 
001981 atccatgaac aaatttgact agctgtctgc tttccagttt gaatacaagg gttttttttt 
002041 ttaattggac gtagatgtgc gagggtagca tggtcctaaa atatcaggat gtttagatcc 
002101 cacctaaaat tttacatcct gtcacatcga acgtttgaac acctgcacga agtatatatt 
002161 aaatataggc ttaaaaataa ctaattacac agattgcgac tactttacga tacgaatctt 
002221 ttaagcctaa ttgctccatg atttgacaat gtggtgctat aataaacatg ttctaataac 
002281 gaattaatta ggcttaataa attcgtctca cggtttactg acgaatactg taattagtat 
002341 ttttattagt gcccgaacac cccatgcaac accctatata ataactttac accgatggat 
002401 ctaaacaccc ctagaataga aaattccatt tctatccacg taagacaaag acaaaagtat 
002461 gtctgtgttg gtaaaattag agtagaaaga aattttgaat agaaacaaca cttgtcgcac 
002521 aggaaagtga ccaggtctgc atcctgctca atctggtact atcaaataat taagtatgaa 
002581 taagtgagaa gcagacctag tctgcatctt gctcaatcat cctagaatag agactagatt 
002641 gtagggagta tcaaatagta actgtgattg agcatgatgc agactggtat tgatggttga 
002701 atataagaga aactttggta gtgtgtgatt gtgtaaatag ataaaaatgc acattatcaa 
002761 catgcaaata tgtgaatatt tgtttttgag taatattgtt agatattaaa actttaaaaa 
002821 aaatcaagtt gcaaatgtgc ggaccaccct actattttat ttaaacgaac tataaatgga 
002881 ggtgtggttg gtggaattag agggccgtag aaggaattag aggttatggt gcgtaaggtg 
002941 taatggggcc ttaaaactta acatgttatc acgatcaacg tgatatgact cgtagaactg 
003001 tagaagatgg atagcagaat acgaacaaac ggccaatcac gacgactcgt agaatatgat 
003061 tacacctagt tctaatcgat ttagctttag atattaagcc tattgtgcct tccgttttta 
003121 gttttgggtc ttagttctcg aattaaattt aaaaatatac tattaatttg gtttttcgta 
003181 gaaatattcg tgatatatac tttttagcga aaatatacca gtgtcgcgtg gtaggagcgc 
003241 aagaccgcac ggtatcgtgt gatgaagcat cgagaccgaa cagtctcgta taaagaatca 
003301 gcgagaccaa atgtcatgtc caacggagct acttaattag tcattaatta ccctaattaa 
003361 tgattcatta acaataatta gtgattaatt attctaatta gcgattaatt aatcactaat 
003421 taaccttatt caatcggcag aggcagtcgc tatcgctcac tgactgagcg agactgctcg 
003481 gtctcgcggt ttggccgcgc gagaccacgt ggtctgacgt cgccaccgcg tacatcctcg 
003541 attccgtcgt tcagtgctat ttcgtcgtgc gagaccggtc tcgcgctatg atcacgcgat 
003601 accgtgcagt ctcgcgttct cctcgcgcga gaccgttcac gacgtcactc ccacgtcact 
003661 ttcgcggaat ggttatacga gatcgacggt atatttcttc taataaattt acattctgaa 
003721 tatttttgag aaaccaacga atgaacagtg tatttttaaa tttaattctt ctctctgacc 
003781 atctggtctt cattttagta atgccgctaa ttaagcatat acttagcact ccatgtagag 
003841 cttgtttaga tccctggcaa attttttcat cctgttacat cgaatgttgg aaacatacat 
003901 ggagtattaa atataaacgg aaaaaactaa ttacacagat tgcatctaaa ttgcgagacg 
003961 aatcttttag gcctaattgc tccatgattt gatagtgtgt tgctacagta aatatttgct 
004021 aataatagat taattaggct taataaattt gtctagtagg ttacggatta attaggctta 
004081 attcgtctcg caatttaacc atttttaaat tatttgagcc cacggttttt attatttttc 
004141 cgagatataa ttgctacgta agcgccacgt caataccacg tgggacgaag acctagtcaa 
004201 accagccatg tagttggcac gtcagttaaa accgccttct aaatcgtcaa gggatcttgt 
004261 ttgtgccggt tttgacagtt cagggacctg ttatatctag ttttggggtt taaggacgaa 
004321 aatcggattc ggtgtaaagc taagggacct caaatgaact tattccttat ttcattgtca 
004381 tgcagctgtt cctggtttac ccataatcgg aaatctgcat caattgaaag aaaagaagcc 
004441 tcatcagacc ttcacaaaat gggctgaaat ttatggccca atctacacta taaggaccgg 
004501 ggcttcttcc gtagttgtgc tcaattcaac tgaagtagcc aaggaggtaa cttagaagtt 
004561 gtctatcatt tctatcgact tgcataactc taaaatgatg gtctcacatt tgatttgatc 
004621 ataaataaca caaaccaata ctgtactctc ttttgcaggc gatggttgca aaattctcat 
004681 ccatatctac ccgaaagcta tccaaagcac taacagtgct tagtcatgat aaatccatgg 
004741 ttgctaccag cgacagtggt gatttccaca aaatggggaa gcgttatatc atgttaagca 
004801 tgctgggtac ttctgcacag gtatacatct caacaatttc atttttcatt tttagtactg 
004861 attgttctca ataactccag tctgcatttc caatattgat tatctgctac cagttacact 
004921 ttcagagttt cacttatctg tggtctaaca acgcaacgcg ttttcataaa tttcagaaac 
004981 aatttcgtga cacaagagat atgatcatca ataacatgtt aagcactttc catcaactgg 
005041 tgaaagatga cccacatgct cctctgatat tcagagatgt tttcaaggat gagctattcc 
005101 ggttgtccat gatccaggtt tggattgtct ctctgaactt gaactgtcag atggtcgatt 
005161 tgttattttc ggtactaata attaatgtcg caaacttcag agcttaggag aggatgtgag 
005221 ttcagtctat gtggatgaat ttgggaggga catttcgaag gaagaaatct acaatgctac 
005281 tgtgactgac atgatgatgt gcgcaattga ggtcgactgg agagatttct tcccctacct 
005341 cagctgggtt ccaaacaaga gcttcgaaac aagagtgttt actacagaat ctagacgaac 
005401 tgcggtgatg cgcgccttga tcaagcagca gaaggaaagg attgtgcgtg gagaggtgag 
005461 caaaggcata ctttgtcaaa tgacattttt catctttgct tctatgccaa aataatgtta 
005521 ttacttccag agatcatctt ttttttttta taatggaata gataacatcc cgactttttg 
005581 ctcaataaac agcccattat tacaaagaat cactcaaaca aaagagtgta gatcaaacca 
005641 aattaaacac actcaagaaa aaaaataaag cgaccaaacc aaagataaag agcacacaat 
005701 tattcaagtc tatttgtgaa tctttatcca taattgacaa aaagttgcat gatcgtcgtc 
005761 tcaagcttac gacatgcaac ctttagaagc tctccatctt catcacactt ttgtagttgt 
005821 gcccaagacc ggagccaata tgttgccctg aaaattgcct gcatatatga gaaagatggt 
005881 aatttgtcaa taatcaaatc attactactc aaccactgag cccaacatat agtagatgct 
005941 cctacaagta ttagtttgct cttcttcttg tcaaccccaa aagccaacca tcaaacatat 
006001 gggatatggt attagggagg tataaaccaa aagcaaactg taccgccctc caaacaaatt 
006061 tcgcaaaatg acaatccata aacagatgtt ggatagtctc atttttcatg cagaagtaac 
006121 atcttaagct tccattccaa tttcgtcttg ctaaattatc tttggttaaa acaacccctt 
006181 cgagcaagta ccacatgaag attttaatct tgagcggcat cttaagtttt caaatgatct 
006241 tatttctctc aatataacta ttattgatta aggctaaata cattggcctt actgaaaaca 
006301 caccattttg atggtaattc aatctaaagc catcaggaaa atgattcaat tgaagagatc 
006361 atcttctttt gactccatga aactgagata tatgtgcagg caaggacatg ctatctggac 
006421 ttcttgctgg cagagaacac actgacagat gagcaactaa tgatgctagt gtgggaggca 
006481 ctcatagagg ctgcagatac taccttggtc accacagaat gggccatgta tgagcttgcc 
006541 aagaaccctg acaaacaggc aagaaatatt gttactctgt tccagctcat ttttggcatt 
006601 cttggcttta tcaaccaata cttttttttt tggtcttttt cttggcattc ttggcattta 
006661 tgacaggaac ggctttacca agagatccgg gaggtgtgcg gcgacgaggc ggtcaccgag 
006721 gagcacctgc cgtggctgcc gtacctcaat gccgtcttcc aggagacgct gcgccgccac 
006781 tcccctgtcc cgctcatacc tccgaggttc gtcaacgagg acaccatgct cgccggctac 
006841 gatgtccccg ccggcaccga ggtaagcaca accatgtgac aatggcgggc cggcagggtt 
006901 tgcactttcg gtttcggcca aaaatttcac aaactttggt gtttttggta cttctttttg 
006961 cacgaaatta tttgaaattt taattgaatt tgaataaaat tttgactaaa ttcataaaaa 
007021 ctttgcaaga taatgaaagg cttttttaaa gataatggtt aaaaatacaa cctctatatc 
007081 tacactggac cataagaaaa caagaaatct caactattat aaaaattgaa gatgtttctg 
007141 cgatccgtca tccgtgtttg agtcggtttt aattttatgt tctgatttta atctatatat 
007201 cttctctatc tctatctcta ctattataaa aattgaagat gtttttgctg gtattttggt 
007261 acgtcatgcg tgtatgagtc ggtttttaaa ttcgtttgct tttaaaaata tatatccgta 
007321 tttgagtcgg ttttcaagat tgtttacttt tggtaataca gaaggaatta tataagaaat 
007381 atgtttaaaa aaactcgcat gttaacttga gacgatcgaa ctcctaactg tagctcatga 
007441 ttatatatat atatatatat atacatatat atatatacaa gtgatctccc acagtgaatt 
007501 ttatcttaac taaaccatat aacaataata agattaaaat agacttcaca cgttgcaacg 
007561 catgggtatt ttttctagtt attataaaaa ttgaagatgt ttttgccggt attttggtgc 
007621 gtcatcgtgt atgagtcggt ttttaagttc gtttgctttt ggaaatacat atccatgttt 
007681 gagtcggttt ttaagatcgt tcacttttcg taatacggaa ggaatcatat aagaaatcta 
007741 tttaaaaaaa ctcgcatgct aacttgggat gatcggattc ctaactacag ctcatgattt 
007801 tctaaaaata tatttatcca agcgaactct cacagtgaat ttcatcttaa ctaaaccata 
007861 taacaataag aagattaaaa tagacttcac ccgggtattt tttctagtct aagaaaaaaa 
007921 aagaagacta agctccactt ttcttctata tccttttttc aaacctgcct tggcacatcc 
007981 cgttaaattc aatactccct ccgttccaag gcaacatatc ctattcacac aggccctcaa 
008041 gtgtatacac atgcacacca actaaaaaat gtcaccaaaa aatctagaaa aaatcataca 
008101 catactttca attgtattac acctagggtt aaaatcttaa cgtcaaattc attatatttt 
008161 agccgtaaca aagaaaaaat ctgacagttt taaggttgct attttgtcag aattttatct 
008221 tttttgttat tctctatgta gaatgaattt gaagatgcga ctttgcacgt agatgtaata 
008281 ctattgaaag tacatgtata aattttccta gaattttttg tgataatttt tagttggtgt 
008341 acacggtgtg tacacgcgaa ggcctgtgtg cataggatac gctcccccgt tccaaaatat 
008401 aagagcctat aactggatgg gatatttcct ctgttctgat tcgtagtatt aagaaatatc 
008461 ctatctggtc ctagattctt atattttaat cgtaccggac aaacttgttg ttattgactt 
008521 ctcctaaagt tttctcgggc gggatataat tgcttgctgg gggagtccga aatttcaatc 
008581 actggtcggc ccgccgagca gtgatcaaaa tcccctgaaa atctaacaag tgatggtcat 
008641 ctgtttcaga tggtgatcaa cctgtatggg tgcaacatga acaagaagga gtgggagtcg 
008701 ccggaggagt gggcgccgga gaggttcgcc ggtgggaggt tcaaggtggc ggacatgtac 
008761 aagacgatgg cgttcggcgc cgggaggagg gtctgcgcag ggagcctgca ggcgactcac 
008821 atcgcgtgcg ccgccatcgc gcgcttcgtg caggagtttg ggtggaggct gagggagggt 
008881 gacgaggaga aggtggacac cgtgcagctc accgcctaca agctccaccc gcttcatgtc 
008941 cacctcacgc ccagaggaag gatgtgaacc attatattca ttggaagctg ttgctcgttg 
009001 aataatgata tatagttatc tttgagatgt atttactatt agcaaaatct ccatgctttg 
009061 ttctggatag gagaaaacat attataatat atcgtggaat atttttttta 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ936917 whchan25a07 721
more... (Total Hit Count: 6 )
/rice/oryzabase