cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073357     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0925800 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 42,364,752 -  42,367,751  ( - );   3,000(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 42,364,752 -  42,365,041 ( - );   290 (bp)
Exon 2 Location 42,365,135 -  42,365,224 ( - );   90 (bp)
Exon 3 Location 42,366,289 -  42,366,448 ( - );   160 (bp)
Exon 4 Location 42,366,870 -  42,366,918 ( - );   49 (bp)
Exon 5 Location 42,367,481 -  42,367,751 ( - );   271 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0925800 Os01t0925800-01 J033027F19 209482 J033027F19 11444 LOC_Os01g70140.1 AK073357 7722 AP008207.2 255672756 BAF07173.1 113534790 NC_008394.4 297598437 NM_001051794.1 115441958 NP_001045259.1 115441959


Chromosome: 1 ,  position: 42,364,752 - 42,367,751 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgttcgatt cgattcgcat cggcgttgct tccaacgaga gggagggagg gaggagaggc 
000061 gaatcgcggc gagcggcggc ggcggcggcg atggtggacg tgtcgagggt gcagaaggag 
000121 ctgacggagt gcaaccggga cagggaggtc tccggggtgt ccatcgcgct ccacgacggc 
000181 tccaccatct cccacctcac cggcaccatc gccgggcccc aaggcacgcc ctacgagggc 
000241 ggcaccttcg tcatcgacat ccgcctccca ggtactcaat ccccacccct cttcctcgcc 
000301 gccgccggcg gattccttcc gttcgtgttt gggcggcggc gcgatcggct tttgcccccg 
000361 tcgcatctcc ggagtagatt gatgatgcgt agagggattt agtgtggggg aggtaggtta 
000421 gggcaagtca gggtgggatt tggttccgga ttaggatttc aggatttggt tcaatgcgtg 
000481 ttcgtcatag tgattatatt tgtgtgccat ggagaagttt gcatttgagc atgcggattt 
000541 ttgttgagat ttccagcctg ttaaatatat agctcaaggt gtattatttc atttccgtcg 
000601 tttataattt caaaactgag atactgcaag agcatttgct tatagggtct caattgtgtt 
000661 tcaacttcct accgtgacga tgagaacgga gtttccatgt cgaatctttg tttacttgga 
000721 attccgtggc cttgttcgca tcaccatatg gttttaaact gaaagccaag caagagttgc 
000781 gatgcattgg aaagattgtt ggtgtcatct attgattgtg ctctgattgg caggtggtta 
000841 cccctttgag cctcctaaga tgcagtttat caccaaagta tggtatgcaa gctttccttc 
000901 tcccttttgt tttttgcttg ttgcttgtgt tccttgctta tatgaatcct tccttcgccc 
000961 ttttgtttac tgcttgtgtt ccttgcttgt atgaagccat cactcccgga gctaactgtt 
001021 gccaacaatt tttattggtt cacattagtt gatctgttgt tgtttggtca ataagcgata 
001081 acagcaatgg tacattgtga cacagtatct ggaaatatat gccgttccag tgttgataaa 
001141 ttctaagtgc tgcaatgagt tcactcttca tgtgctgctt atctgcccat gtccagaaaa 
001201 aaattgtgac ttatcagttg cgagtttggg attacttgaa ctttactggc gcttctttac 
001261 tgataactac aagtcttgat ttctactcca atctatgttg aaggcaccct aacattagca 
001321 gccaaaacgg agcaatctgc ttggacatac tgaaggacca atggagccca gcccttacat 
001381 tgaagacggc actgctttcc ctccaagctc tgctttctgc ccctgcacct gatgatcctc 
001441 aggatgctgt cgttgcacaa caggtctgga ctacttgact atttagcttc atatttttta 
001501 gcataccacc ttgttttgaa ctattatgca ttaagagtaa atttacattg cctcttcttg 
001561 gaacattcta tatccccacg aggcaagctc agttttgtgt atatatgcat gactacctca 
001621 tattgcacct ggtaaggtag cagcaaagag tgctacaaca tattaaatat gagttatcca 
001681 agtgatatga tggcatcaat tacatgagat ctgtgtttgt acctgtcaca taattggtaa 
001741 actttgtaca tcttctgagc tctgggttac tgcatttatg tacctattcc agtatctatg 
001801 ttcagttggt acctggtaaa gtgatacaca attgttttca cttttcacct ctatagctgg 
001861 catttttttt atagatacac gttttgtatt ggacacattg tgtgtgccgt gtagagttga 
001921 tgctagatga gtagatgaca agcaaggtgc aaaggttgtt ctgatcacat gagctcatca 
001981 agcttttctg cactttgttc taaatatgct ctgtgtcctg tgtgttacta atgatggtgt 
002041 gcaaaaagat atgtataaaa tgttgcatta tgcgacctga ttgtttatta gtccggctag 
002101 cctggactgg actggagtat agggaagtcc aataaaacag ttctatctgg tgtcctgttt 
002161 gtgagtaaaa cttgccaata ttcaagcata gcaacatgac tcagctagat gctttaattg 
002221 tcattgtgcc ttactattag agagtcactt ggctattcag tctaggcagg tccagagtct 
002281 ggactgtacc ttatgtcctt atctaggtta cataatgagt tcaagtgagt caatccttga 
002341 ctaaagcaat gactaaagca atgtagagtg taagtataga tgggacaaat tcactagaat 
002401 tttcatttat gattggagca acaccagaaa ttcccaagtt caggacatgc tcggaactta 
002461 caggtttaag gaatcagtgt caagcttgtc ttctgatcat tatgtctgtt ttcatccatt 
002521 tttgcagtac ttgcgtgact attccacatt ttctgctact gctcgctact ggacggaggc 
002581 ctttgcaaag aattcctcca ccggcatgga agaaaaggta ttgttattga ggagtactca 
002641 tatttattgt tccagtgggt atacagaagt tgtagatacc gtagtaaaat actccattct 
002701 gcaatcacag gtgcagaagc tggttgagat gggcttccct gaagacatgg tgagaagtgt 
002761 tctgaagagt gtcaatggcg acgagaacat ggctcttgag aagctctgct ctggctgagg 
002821 ccctataagc cgatatgaac tgtaaattga atccccattc gttataagac aacagtgctt 
002881 gctaatgctc ctgttctgcc atttaagtgt ggctttatga cactcttcta tataggggat 
002941 tggaccatgg gacgttggga ctgaactgaa cctatcctaa cttgacagag ttcggtcatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ469430 baal20p12 631
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ681851 whok6b14 858
more... (Total Hit Count: 32 )
/rice/oryzabase