cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100138     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0199500 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 5,053,919 -  5,055,835  ( - );   1,917(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 5,053,919 -  5,054,547 ( - );   629 (bp)
Exon 2 Location 5,054,676 -  5,055,030 ( - );   355 (bp)
Exon 3 Location 5,055,693 -  5,055,835 ( - );   143 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0199500 Os06t0199500-01 210974 J023010L24 8974 LOC_Os06g09910.1 AK100138 8992 AK100138.1 32985347 BAG94463.1 215712336 NC_008399.2 297606578 NM_001063603.1 115466937 NP_001057068.1 115466938
Os06g0199500 Os06t0199500-01 210974 J023010L24 8974 LOC_Os06g09910.2 AK100138 8992 AK100138.1 32985347 BAG94463.1 215712336 NC_008399.2 297606578 NM_001063603.1 115466937 NP_001057068.1 115466938


Chromosome: 6 ,  position: 5,053,919 - 5,055,835 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaccaaagtc caaaggctat tctgaaccga agtcctccca caccaaaact tcgaggcccc 
000061 cgtcgcggca ccctcctccg ccgccggatc tccaccggag tacggcgccg gccaccccct 
000121 cctcccccgg atcttcaccg ccggtgagtc ccccgctcct tcccataatc tctcggtgag 
000181 tctccgcctc ttcccgtcct cctccttgct cccccgcgcc ccgcctcctc aagcgcacgg 
000241 ccggcgaaca cccagaggcg ctgtgtgcgg ccggcctcct atcgttgtcc cacccccaac 
000301 gtagccttct cttctcccca ctgccggatc ctcgcttgcg cggccgggga gcagcgttgg 
000361 agccaggggt gcgaccttcc tccatcttgg ttcgaatggt agcgtttgtt tcctagagga 
000421 attggggggc tcagctgaga accatggccg gcgttagttt ctggccatct tagcacaatg 
000481 acactacgga gtattaattt gtactaggtg aggttatttc cacctccaat ctgagtttag 
000541 ttttagttag accgctacat caatccaagc ttgcaaggta ggaacagaaa ctagtgacca 
000601 gtttgctaat gtatttatca tgatgcaatt acctttgttt ttgaactaat ctttagctta 
000661 gatatggaat ccgtgaatga aatggcattt cccctttctg tttcactttc atttcattcc 
000721 agaaattcat tgtgaataga gttttcgtat agcagcataa agatcttctg aattcatgta 
000781 attctaatgt agtggagcgg tacaggtgaa gtactgaggt gatgactaca tcagagtcag 
000841 tacaagaaac cttgggattg gatttccctc atcctagcaa acctcgggtc ctccttgctg 
000901 cctctggaag cgtcgctgct ataaaatttg agagcctttg ccgtagcttc tcggaatggg 
000961 cagaagtcag agccgtcgcc accaaggctt cattacattt tattgataga acgtctctgc 
001021 ctagcaatat tattctttac actgatgatg atgaatggtc tacctggaag aagatagggg 
001081 atgaagtttt gcacattgaa ctgcgaaaat gggcagatat catggtgatt gcgccattat 
001141 cagctaatac cctagctaag gtatgtgatt ttcttttctt tttctggtgt gaaccatata 
001201 ttttttatgt tgaatcctgg atttgtttga caatgtcaac ttgttttcgc tgcctacaaa 
001261 aaagtgacac tggattagtt ttgttcagat tgctggtggt ttatgtgaca acctcttgac 
001321 atgcatagtg agagcatggg actacagcaa accactcttt gttgccccag ctatgaacac 
001381 cttcatgtgg aacaacccgt tcaccagtcg tcatcttgag acaatcaacc tgctaggtat 
001441 atctttggtc cctcccatta ccaaaaggct ggcctgtggt gattatggta atggtgcaat 
001501 ggctgagcct tctgtgatcg attccaccgt caggcttgct tgcaagagac agccacttaa 
001561 tacaaatagt tcacctgtgg ttcctgccgg cagaaacctc ccatctagct gatgcggcaa 
001621 ctattctgtt caagattaaa ctctggacct agttttctat ggtaaagagt acttcgtgtc 
001681 acaaaatgaa atgttaagtg atgtctatgt cggccaacat agcaccttta ttggccagtt 
001741 gttgtactac tattagtgat atggtaggac gtggagattg gagaaaggct attgtcccag 
001801 cactttaatg ttgcttttcc aaatttcttg tgacataatg ctaaggtgct gatgaatatg 
001861 ttcatgttgt agcactattt ttttctgcaa atgtttgcaa agactcgtga tggaatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY847146 bart39g03 569
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ650638 whem20m19 633
more... (Total Hit Count: 5 )
/rice/oryzabase