cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK099141     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0336200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 13,475,322 -  13,476,698  ( + ) ;   1,377(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,475,322 -  13,475,540 ( + ) ;   219 (bp)
Exon 2 Location 13,475,622 -  13,475,869 ( + ) ;   248 (bp)
Exon 3 Location 13,475,972 -  13,476,698 ( + ) ;   727 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os06g0336200 Os06t0336200-01 206312 J023055A02 3039 LOC_Os06g22960.1 AK099141 33916 Q5Z6F0 TIP22_ORYSJ


Chromosome: 6 ,  position: 13,475,322 - 13,476,698 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attcttagtg accacccccc atatcacatc ctctccttcc tcttcctctg ctcactcagc 
000061 tctcccccgc gcgcgccacc gtcgtcgcca tgtcgggcaa catcgccttc ggccgcttcg 
000121 atgactcctt cagcgcggcc tccctcaagg cctacgtcgc cgagttcatc tccaccctcg 
000181 tcttcgtctt cgccggcgtc ggctccgcca tcgcctacag tgagtaaatc gatggcacca 
000241 tggcgcatgc aaacgtacga tgaacggtgc gattaattgt gatttacgat cgaattgcag 
000301 ccaagttgac cggcggcgcg ccgcttgacc cggccgggct ggtcgccgtg gcggtgtgcc 
000361 acgggttcgg gctgttcgtg gcggtggcca tcggcgccaa catctccggc ggccacgtca 
000421 acccggccgt caccttcggc ctcgccctcg gcggccagat caccatcctc accggcgtct 
000481 tctactggat cgcccagctc ctcggcgcca tcgtcggcgc cgtcctcgtc cagttctgca 
000541 ccggcgtggt aagccttctt tcttgcatgc acctcaccgc cagagctgag ctctcagcct 
000601 gatccgtcac tcactcactg acgccgccgt gggtggccgt tggtttgcag gcgacaccga 
000661 cgcacgggct gtccggcgtg ggcgcgttcg agggcgtggt gatggagatc atcgtcacct 
000721 tcgggctggt gtacaccgtg tacgccaccg ccgccgaccc caagaagggg tcgctcggca 
000781 ccatcgcgcc catcgccatc ggcttcatcg tcggcgccaa catcctcgtc gccggcccct 
000841 tctccggcgg ctccatgaac ccggcgcgct ccttcggccc cgccgtcgcc agcggcgact 
000901 acaccaacat ctggatctac tgggtcggcc ccctcgtcgg cggcggcctc gccggcctcg 
000961 tctaccggta cgtctacatg tgcggcgacc acgcccccgt tgccagcagc gagttctaat 
001021 tacccatttc gccatcggca acacgcataa aaatggtggt cactccatcg tcagaatctt 
001081 gtgaggatgt gttgtgaagg actgatttgg ttcagatggg gaagaaggct tttgttgcga 
001141 ggatgtgaca cttgggtgat gatcgatcca tgtttagttt cttcttgatt aatttgtaat 
001201 gtgatcagtg tggagcaagt tggatgagat gcatgtttaa gatcgaacac ttctgttgag 
001261 tttcattgtg agatttcatt tgattcgggc catgtcattt cagtttgttt gtagcctcca 
001321 aaataagctt gtgtcttctc ctcgcaaata ggaaatcaga aataaaattg ttccggg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248215 FLbaf105e08 1029
more... (Total Hit Count: 165 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ947322 whchul1i14 757
more... (Total Hit Count: 609 )
/rice/oryzabase