cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK098865     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0298200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 11,138,179 -  11,144,692  ( - );   6,514(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,138,179 -  11,138,964 ( - );   786 (bp)
Exon 2 Location 11,139,512 -  11,139,816 ( - );   305 (bp)
Exon 3 Location 11,140,435 -  11,140,635 ( - );   201 (bp)
Exon 4 Location 11,141,864 -  11,142,546 ( - );   683 (bp)
Exon 5 Location 11,144,467 -  11,144,692 ( - );   226 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Os06g0298200 Os06t0298200-01 200229 J013001A08 227 LOC_Os06g19444.1 AK098865 29312
Os06g0298200 Os06t0298200-01 200229 J013001A08 227 LOC_Os06g19444.2 AK098865 29312


Chromosome: 6 ,  position: 11,138,179 - 11,144,692 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcgtgttccc tctctctctc ctcttatcct tctcttctcc gtttgcttcg ctgctgctgc 
000061 tgctgttcta cgcgcgcgac acggaagaga gaaaagtggt tttttattgg gttcctaagc 
000121 cctttttgtt tccagaggct tctggattga tcggttgatc tctctccctt cccctctagg 
000181 gtttcctggg ggtggatctg aggagcggcg gcgctccttc gtcccggtgc gtgatctctc 
000241 tctctctcaa tctccgttga ggcgttggtt tccccgcttg gattctgcga ggttggtagt 
000301 gtttgcgtcc gcgggggttt gcgctctggt ttggatttgg accgagttcg agtacttcgg 
000361 agccctttcc tctgttggga ttcgttggct ttggggtgtt ctgcatgcat cggtcctttt 
000421 acggaggatt tggggggttt tgttctgttt ctggctggct tcgatttttt actggctgag 
000481 tgattgctgc ttcgtgtgta ctacggcgtt gttcgtgtgg ttggatttga tatgggttaa 
000541 ttttggtttg gatttcgtcc ggggtcatgt aagtgagatt tcgggttaag tttgtgacga 
000601 cagctctgaa gtttcttaca agatgttttt tttaacagta atcgactttt ctacgattgg 
000661 ctattttttt cccctttgtt tcaatcagaa aataaatctt ttccccttta acaaatgggc 
000721 gaagcatgtt tttgaattga atttgtggga ctgttttttt attcgatgaa ctaaaaaaag 
000781 ttatggatct taggattgtt tttctttttt ttattcttcg tatgttgtca ctaaataaaa 
000841 aaatttcagc ttttttctat tgtgaaatat attgtcaata tgttcttgct ttttttttcg 
000901 tactatggtc taagaaactg gagttaaaat gaaagagaac tcggtctttg actaattcta 
000961 caatttttta atgggacatc ttttctacat cttaaattcc atcgttttca taaaattttc 
001021 tttcgtgcag cttttttttt cttgcttgcc atagctatta aaatctttag ttcctttttt 
001081 ttaatcttta tccagacata gcttgcctag atgcaaaagt tgtgtgtttt gctatgcccg 
001141 cctaaaataa catttatttt gccatgtcat caaacatttt tctttctgcc aatcctgcat 
001201 gtccatgaaa acatttctta ataggcttcc ttaccctact ttttactgga gtactagtac 
001261 tcaagactgc aattttttct tcaccttttc gtttaccttt ataaggcttt ttttctcccc 
001321 tgatgctatg attttatcct gcaaattgac ccttcttttg gttttataaa aaagactagg 
001381 atagctccgt ctttctttgc ttatatcgtt atttcagcct cttctgttag atatatttcc 
001441 cccctatttc gagtgttcaa ctaatgcggc ttgtcgttcg ttgcttggag aaattgtgat 
001501 aaaatatact attttcataa tgaaaccgat aattgtcgtt gactcgtaat gtagttattt 
001561 tggttcttgt gataattttc tacatctctc tttttccctt gcaaacttag tacctatggg 
001621 aatgggaata tatgctagaa gcaatgagtg aggtgctgga attatataat atgtgccaag 
001681 agcaggagat tccaaagact agttgctgat acttttgtag tgggatttcg attttttatg 
001741 cttcggttgg caaatggggg cggagtccac agattaatga gtccgttgaa acctaaagta 
001801 gatggcggta atatgtccta attaggaaat atatctacat tatcctttag attatattat 
001861 tgatagctga tgcaagacga cgctgagtgg aacatacttg ttgctacctg ttttgaacat 
001921 ttctcttggt ttgaatgaaa actgaaaagg atggctacct agggtcctag gtcatagcaa 
001981 ctgaaacagt aaaaaatata aaatctatgt tctcatgtag gtggatgccc ataaatgtat 
002041 gaatattcat ttatgaatac tctacggttt tccaatagta tgtgggaata tttttttatg 
002101 tgctggtact aatgttttct aataactgtt tgttgatact gtacaggttt atgtaaatct 
002161 gatcgatcca gaaagtttgt gaaaaaagag tgtggcacat acctaaagct ggcttaaagt 
002221 ttgcccatag ctaatatcat gggcgctctt tgtgatttct gcggggagca gaggtctatg 
002281 gtttattgcc gatcagatgc agcatccttg tgcttatcgt gtgaccgtaa tgtgcattca 
002341 gctaatgctc tttctcggcg ccatacaagg acacttctgt gtgatagatg tgcttcacag 
002401 cctgccatgg tccgctgcct tgtagaaaat gcctcgcttt gccaaaattg tgattggaat 
002461 gggcatagtg ctgggtcttc agctgctggt cataagaggc agaccataaa ctgctactca 
002521 gggtgcccat catcttcaga actttcaaaa atctggacat ttgtttcgga tattcctaat 
002581 gtagctcctg agccgaattg cgagcaaggg ataagcatga tgagcatcag cgacagtggt 
002641 gtcagtaatc aagacaatgc tgcaggggac agcagtttgt tagatattgc tagtgcaacc 
002701 cttatgagtg atcttggcac tgctggcaag ccaaagtctt tgataggctc ctcatctgaa 
002761 gctggcgtga accttcttcc acttgctact gatcagatgg ctggatccgt ggattcgaca 
002821 tcagctaagg tgctataagg ctttcacaca ttcctccata catagattta ctaattcgcc 
002881 tcaattcacc tctgccgctg catatactac ccatatccca tggatgtaag ataatcgact 
002941 gttttcctcc ctacagttgg ccattatcat ttgtttactc taccatatat gccatgattt 
003001 tctttttctg tgtgtactct attttgaatg catattgtaa gtgagttcac ttaaatttct 
003061 atacaagaaa aagaaataat ctaactgtta atgatgcata agcataagct tgtcaatgat 
003121 tactttacca tatgtcatgg attttttctg tgtactccgt tttgaatgga tattgcaagt 
003181 gagttcagtt aaatgtctat accaaaaaaa actgttaatt gtgcataagc ataagcttat 
003241 cggggtagtg gatggtgcat ggaggttcaa taggctagca gaagttgctg aaactgtata 
003301 catgcatgtg caatgagata tgaacattat gatgtgtatg gactacaatc tggatccact 
003361 cagcagatat gaatagatga aacagggtaa taacagaata tggagtatag aaaatgtcta 
003421 tattacagaa atagttatag gactatcgag aggtttagac aggtggataa ctatggtgct 
003481 tatgttctta tgtcaagtct tgtcttccaa gtgttctgtg acctcatgca gatctacaaa 
003541 tgcatattct cacaacatta aaatttggta caagtaatct tttaaaatta ttccttcaca 
003601 atttctttgg aaaatgttaa gaacactgct ttgtattatt tggatgatgt agcatttcac 
003661 attttagtct atctcgtatt ctaatttatc ttactggacc atagattccc atgacaggtt 
003721 atttgtgtgg agaactttaa agattctata cagagagaat ttactttcgt ctttcttcaa 
003781 atcactttct ctgtacagca tttgcaaatt ttcaggccgt tttacttcaa tcttccacta 
003841 caccatgttt cttttttaga gagcataaga cacacacaca cacacacaca aacacattct 
003901 tccacataca ttcacaccgt gtgtgcgtgt aagcacccta tgcacacaca aggcttcacc 
003961 caggacatgc tttctctctt aatccacacg tgtgcatgct ccatgcttct tcaaaattag 
004021 tttgtcacta atctgtgttt atggtctcct tatgcaggtg ccctatacgg cagaccaaga 
004081 tatgttcagc aaagacagta tatatgaaga tttctgtgtg gacgatgttg atcttagttt 
004141 cgaaaattat gaggaactat ttggcacctc ccatattcaa acagagcaac tgtttgatga 
004201 tgctgggatc gacagttact ttgaatcgaa ggaaatacct tctggaaact ctgatgaggt 
004261 ttgtagttta ctcttaatgg ttccttttta agaagtaagc ttcaattcca cagtaacatt 
004321 catttgtagg ttttctcgca actcctgatc ttctttgttt caccaattca acttgccctg 
004381 cacatcttta ttgcttgcag gcttttctct tggttcgatt tctcagatat atgttattta 
004441 tttgacctgg tttgagtcaa atttatcttt cattaaagat aaattattag gtgttaaatc 
004501 tctgtacaag aggagtcagc atttggatta ataattaaat tactctcgtc tctcccaagt 
004561 ttatcatttc agtccatggt ctcatccttc tcttagatcc ctccccttta gttgttcctt 
004621 ccctgctctc cttggaactg atatattcgc agctcccatg ttcaagaagc aaaagatgga 
004681 agttcttaat tagtgtttct ggtctttgtg tttatgaaac aaacaaaact atgactgaaa 
004741 atggtaatca gtatacattc tcaaatgcag cagttcattt gtaatccatt tgtttggaaa 
004801 ttcatgttgt atttagtttt gtctggggct tattggagtt aactttcagc atttatattc 
004861 attattatct tttcagcagc ccaagctgat gcagccagtg accagcaatg cagtatctgc 
004921 tgattcaggg atgtcgatcc caggagccaa aggtgattcc agtctttgta tacctgtgag 
004981 gcaagctagg tccagtatct ctctttcatt ttctggtttg actggtgaga gcagtgctgg 
005041 agattaccaa gattgtgggg tatcaccagt gctccttatg ggtgagcctc cttggcatcc 
005101 tcctggccct gaggggtcat ttgctggagc taccagagac gatgctatca cacgatacaa 
005161 ggagaagaag aagagaagaa agtaagtgca tttcttacta atttcgctac tcatttgctt 
005221 aaacatttat gctgtataac cacgtaagaa ttctataata aatttgtggc tgcaaaagaa 
005281 ctcaaagaga aattgtagct tgtaaacttt tcggcacaac ctctacttta cacatttggt 
005341 aaagagtgct tgtatcgttg agtttcatga aagaagacac atggaagtag ttttcatgga 
005401 agttaaattt tgagtttttg gaaacatcag tttttgttac cctagtttta cagtaggtag 
005461 aagtaaaatt accttaactc tgtatctttt tacttacacc aaaaatgttt ttggtaggta 
005521 actgcatcac ataaaaacat gctgaagatt ttctgcttga agataactta ttgctacctt 
005581 ttcattcaga gagctaataa cttcttgttt cttgccttct cttctaatat gtcagtccac 
005641 tgatgctaac atgctatatt tctagcatac caattgcctc ctttttgaca gctagctgat 
005701 tatcttttct catggcttct cttgacagat ttgacaagaa aatcaggtat gcatctcgca 
005761 aggctagggc agatgtgaga aaaagagtca agggccggtt tgttaaggct ggtgaagcat 
005821 acgactacga tccactctgt gaaacgagga gctactgaac acaataaaac attatccaag 
005881 tgttaggtta gcaagcatca accaatgctt gttgtggctg gcaggaaggc actcatacta 
005941 caaacaatgt ggcaggcctg cctctaaaaa caacaaaaaa aacagagcaa tcaaggggac 
006001 aaaaaggaca aaaagatttg aatttgggaa atttttcaga tgctaccccc tcctttttct 
006061 tctgtacagt ggagggaatt tgcatctttc tgttgctttc gggaggagcg atttgagtcg 
006121 ctgcccacct tttgtgaatt aatcttgata cagctgaaca aacttcactt gcatttttat 
006181 ctcctttcta ctaaccagag catccaccta cccttgctgt ggtgtttttg gtggtatgct 
006241 tccagattgg actattagca agacaaggat ggatgtagtc gtgaaatctt ctgctgctct 
006301 atttattgtt atgtaaaatc tgctgtaatc cggagtttat tctgcaactc tgcatgtgta 
006361 aataccagat cagaataaac tggtagatgt aaagttttct ttattttctc aagtcgatga 
006421 cattggaacc catgtaaccg gccaccaact tttttgtttc actatgctca aatattcgaa 
006481 aacttcagac tggcttaatg ctattatttg tact

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK253130 FLbaf114k16 2307
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ905872 whthkles39d08 741
more... (Total Hit Count: 19 )
/rice/oryzabase