cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072958     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0682900 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 29,340,800 -  29,343,239  ( - );   2,440(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,340,800 -  29,341,223 ( - );   424 (bp)
Exon 2 Location 29,341,381 -  29,341,604 ( - );   224 (bp)
Exon 3 Location 29,341,868 -  29,342,078 ( - );   211 (bp)
Exon 4 Location 29,342,191 -  29,342,382 ( - );   192 (bp)
Exon 5 Location 29,343,008 -  29,343,239 ( - );   232 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0682900 Os06t0682900-01 209027 J023149H22 11138 LOC_Os06g46900.1 AK072958 5191 AP008212.2 255676632 BAF20298.1 113596424 NC_008399.2 297606578 NM_001064919.1 115469569 NP_001058384.1 115469570
Os06g0682900 Os06t0682900-01 209027 J023149H22 11138 LOC_Os06g46900.2 AK072958 5191 AP008212.2 255676632 BAF20298.1 113596424 NC_008399.2 297606578 NM_001064919.1 115469569 NP_001058384.1 115469570
Os06g0682900 Os06t0682900-01 209027 J023149H22 11138 LOC_Os06g46900.3 AK072958 5191 AP008212.2 255676632 BAF20298.1 113596424 NC_008399.2 297606578 NM_001064919.1 115469569 NP_001058384.1 115469570
Os06g0682900 Os06t0682900-01 209027 J023149H22 11138 LOC_Os06g46900.4 AK072958 5191 AP008212.2 255676632 BAF20298.1 113596424 NC_008399.2 297606578 NM_001064919.1 115469569 NP_001058384.1 115469570


Chromosome: 6 ,  position: 29,340,800 - 29,343,239 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggctttttat cgctcgatca ggtggcagcg acaacgagag ggagagcgag agctaagttc 
000061 gccggagaag atggcgatgc ggcggtggag agaggatgcg gtggcgctgt cgctgcgcgg 
000121 gtgcggattc ggcgacgggg acgacgaccg gccggagaag ccgcggcggt acggggtgac 
000181 ggagatgagg agccccttct acgccttccg ccccgcccac cacgcgctcc aggttctcgg 
000241 agagcccccc gcctaatcca tccccatttt tgtttcatgc ttctacgaat cgctgctggg 
000301 ttgtggaatt tggtgtagtt ttaactttta atcgcgttct gattcccacc gaatcgtgtt 
000361 tgaaatgaag ccctatctgc tgcataattc ttcgtgactt gattgtttat ttgttaattc 
000421 ctaaacaggg ccaccatatt ggaatcttca gtctgtgcga tcaacgatca gtgtcagttt 
000481 gtagatcaag tggtacattt gtggatgtca gaatgcgtag cagctacagc tagttttatc 
000541 agttagattc ttaaccaagc tgttccctct tatgtcgaca tagcatggtc ccgtgattat 
000601 atgaagtgct taatgccatt tgagaatttg agaattgagg atgcttactt gcaatgcaaa 
000661 tgaactttct ggctacttta ttgctgcatt gaagctgtga ctaggaagat tttatattac 
000721 tgtttccttt caaatgaaga aaattctaga atctagatag gagtacatca cttgaaaaca 
000781 gaatgaacct cctggttagg gatttcaagg aataaaacag ctcgttctca aggctgtcat 
000841 ttcctgttct atttcaggaa atattggatt ctctaggtcc ttttgttgat ggtttgaagt 
000901 ttactggtgg atctcatagt ttgatgggaa aagaactggt tagagagatt actgatttag 
000961 cacacaagca tgacatatat gtgagtacag gagattgggc agagcatctt ctgcgtcaag 
001021 gaccttcttt tttcaagcaa tatgtcgagg tatgcaggca ttttgtttgt tttgaggtac 
001081 attggtagtg gtacactgtg atacacactt gtctctgaaa attctgaaac cacatgcatg 
001141 acattagatg ttccgtttca ggagtgcaag gcattaggat ttgacaccat cgagctgaat 
001201 gctggatctc tcaagctccc ggaagaagct ctcctgagat tagtccgcct catcaagact 
001261 agtggtttgc aagcaaagcc cctgttttca gtgaagtttg acagttctga tattcctcca 
001321 tctggagata gggcatttgg ggcatacata gttccagtga agcagaattc aggtaactat 
001381 aataagcaat cgctttctaa tgcccttgtt tagctacttc tctgcgtact aagcaatgta 
001441 agtacaaacg caagaaaaca gcattaaggg aaaagttgct caacatacat ttgtcaacat 
001501 cagtttttcc ttggggaatt tagttacaaa gcaatttaat actatcaccg tatgtttatt 
001561 tggctatgct gttggctctg tgattgtact gtctacattt tcctatgatg ccttcctcac 
001621 tttgatgtgg tgcagaaaga gtcgaggatg ttgacctgtt gataaggagg gccgagaggt 
001681 gcttggaagc aggggcagac atgatcatga tcgatgccga cgacatttgc cagcgcgctg 
001741 actctctacg ggcagacatc gtcgccaaga ttgtaggccg gctcgggctc gagaagacca 
001801 tgttcgaggc ttccaacccc aacacctccg agtggttcgt cagaagatac gggccacggg 
001861 taaacgaatc ttcaattctt ccctgagacc ctgaagctgt gcacaatgct atgcttatta 
001921 caatgctatg ctgacagacc attttgcaag caagaagctt agactcgttc atgaggcatt 
001981 tccaggtgta tctaacgtgt tgcgttgtga atgtaggtga atctgttcgt ggatcactcc 
002041 gacgtgatga acctggagcg tctccgaggc ttcaacatgc gtggagtctg caactctccc 
002101 ttattcggaa tcggctcgcc cttcttcctg atgtgacgac ctccctgaat cctcctgatg 
002161 tatacgacct tcctgaatcg tgccagtcct atctcgcatg gaatgctgtg ttcgtggtgt 
002221 tgagatgcct tcctgcaata actggatctg gatgatgtgt agtatgaaaa aaatgtactc 
002281 ctgtctgcta gcagtatcag ctcatgtatc gtatgtactc ttcattctct actcctgccc 
002341 ggaaacttat tactccttgt cacagtttat agggtgttct tttacaagaa aaaaataact 
002401 cggtaaatgt ttgactaata acaattgccc ctaatcgtcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV837054 rbasd18g14 723
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ290222 whsl9h11 650
more... (Total Hit Count: 45 )
/rice/oryzabase