cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK072192     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0298200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 11,138,109 -  11,144,668  ( - );   6,560(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,138,109 -  11,138,964 ( - );   856 (bp)
Exon 2 Location 11,139,512 -  11,139,813 ( - );   302 (bp)
Exon 3 Location 11,140,435 -  11,140,635 ( - );   201 (bp)
Exon 4 Location 11,141,864 -  11,142,546 ( - );   683 (bp)
Exon 5 Location 11,144,467 -  11,144,668 ( - );   202 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os06g0298200 Os06t0298200-03 208169 J013152B04 227 LOC_Os06g19444.1 AK072192 9812 AP008212.2 255676632 BAF19355.1 113595481 NC_008399.2 297606578 NM_001063976.1 115467683 NP_001057441.1 115467684
Os06g0298200 Os06t0298200-03 208169 J013152B04 227 LOC_Os06g19444.2 AK072192 9812 AP008212.2 255676632 BAF19355.1 113595481 NC_008399.2 297606578 NM_001063976.1 115467683 NP_001057441.1 115467684


Chromosome: 6 ,  position: 11,138,109 - 11,144,668 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 tatccttctc ttctccgttt gcttcgctgc tgctgctgct gttctacgcg cgcgacacgg 
000061 aagagagaaa agtggttttt tattgggttc ctaagccctt tttgtttcca gaggcttctg 
000121 gattgatcgg ttgatctctc tcccttcccc tctagggttt cctgggggtg gatctgagga 
000181 gcggcggcgc tccttcgtcc cggtgcgtga tctctctctc tctcaatctc cgttgaggcg 
000241 ttggtttccc cgcttggatt ctgcgaggtt ggtagtgttt gcgtccgcgg gggtttgcgc 
000301 tctggtttgg atttggaccg agttcgagta cttcggagcc ctttcctctg ttgggattcg 
000361 ttggctttgg ggtgttctgc atgcatcggt ccttttacgg aggatttggg gggttttgtt 
000421 ctgtttctgg ctggcttcga ttttttactg gctgagtgat tgctgcttcg tgtgtactac 
000481 ggcgttgttc gtgtggttgg atttgatatg ggttaatttt ggtttggatt tcgtccgggg 
000541 tcatgtaagt gagatttcgg gttaagtttg tgacgacagc tctgaagttt cttacaagat 
000601 gtttttttta acagtaatcg acttttctac gattggctat ttttttcccc tttgtttcaa 
000661 tcagaaaata aatcttttcc cctttaacaa atgggcgaag catgtttttg aattgaattt 
000721 gtgggactgt ttttttattc gatgaactaa aaaaagttat ggatcttagg attgtttttc 
000781 ttttttttat tcttcgtatg ttgtcactaa ataaaaaaat ttcagctttt ttctattgtg 
000841 aaatatattg tcaatatgtt cttgcttttt ttttcgtact atggtctaag aaactggagt 
000901 taaaatgaaa gagaactcgg tctttgacta attctacaat tttttaatgg gacatctttt 
000961 ctacatctta aattccatcg ttttcataaa attttctttc gtgcagcttt ttttttcttg 
001021 cttgccatag ctattaaaat ctttagttcc ttttttttaa tctttatcca gacatagctt 
001081 gcctagatgc aaaagttgtg tgttttgcta tgcccgccta aaataacatt tattttgcca 
001141 tgtcatcaaa catttttctt tctgccaatc ctgcatgtcc atgaaaacat ttcttaatag 
001201 gcttccttac cctacttttt actggagtac tagtactcaa gactgcaatt ttttcttcac 
001261 cttttcgttt acctttataa ggcttttttt ctcccctgat gctatgattt tatcctgcaa 
001321 attgaccctt cttttggttt tataaaaaag actaggatag ctccgtcttt ctttgcttat 
001381 atcgttattt cagcctcttc tgttagatat atttcccccc tatttcgagt gttcaactaa 
001441 tgcggcttgt cgttcgttgc ttggagaaat tgtgataaaa tatactattt tcataatgaa 
001501 accgataatt gtcgttgact cgtaatgtag ttattttggt tcttgtgata attttctaca 
001561 tctctctttt tcccttgcaa acttagtacc tatgggaatg ggaatatatg ctagaagcaa 
001621 tgagtgaggt gctggaatta tataatatgt gccaagagca ggagattcca aagactagtt 
001681 gctgatactt ttgtagtggg atttcgattt tttatgcttc ggttggcaaa tgggggcgga 
001741 gtccacagat taatgagtcc gttgaaacct aaagtagatg gcggtaatat gtcctaatta 
001801 ggaaatatat ctacattatc ctttagatta tattattgat agctgatgca agacgacgct 
001861 gagtggaaca tacttgttgc tacctgtttt gaacatttct cttggtttga atgaaaactg 
001921 aaaaggatgg ctacctaggg tcctaggtca tagcaactga aacagtaaaa aatataaaat 
001981 ctatgttctc atgtaggtgg atgcccataa atgtatgaat attcatttat gaatactcta 
002041 cggttttcca atagtatgtg ggaatatttt tttatgtgct ggtactaatg ttttctaata 
002101 actgtttgtt gatactgtac aggtttatgt aaatctgatc gatccagaaa gtttgtgaaa 
002161 aaagagtgtg gcacatacct aaagctggct taaagtttgc ccatagctaa tatcatgggc 
002221 gctctttgtg atttctgcgg ggagcagagg tctatggttt attgccgatc agatgcagca 
002281 tccttgtgct tatcgtgtga ccgtaatgtg cattcagcta atgctctttc tcggcgccat 
002341 acaaggacac ttctgtgtga tagatgtgct tcacagcctg ccatggtccg ctgccttgta 
002401 gaaaatgcct cgctttgcca aaattgtgat tggaatgggc atagtgctgg gtcttcagct 
002461 gctggtcata agaggcagac cataaactgc tactcagggt gcccatcatc ttcagaactt 
002521 tcaaaaatct ggacatttgt ttcggatatt cctaatgtag ctcctgagcc gaattgcgag 
002581 caagggataa gcatgatgag catcagcgac agtggtgtca gtaatcaaga caatgctgca 
002641 ggggacagca gtttgttaga tattgctagt gcaaccctta tgagtgatct tggcactgct 
002701 ggcaagccaa agtctttgat aggctcctca tctgaagctg gcgtgaacct tcttccactt 
002761 gctactgatc agatggctgg atccgtggat tcgacatcag ctaaggtgct ataaggcttt 
002821 cacacattcc tccatacata gatttactaa ttcgcctcaa ttcacctctg ccgctgcata 
002881 tactacccat atcccatgga tgtaagataa tcgactgttt tcctccctac agttggccat 
002941 tatcatttgt ttactctacc atatatgcca tgattttctt tttctgtgtg tactctattt 
003001 tgaatgcata ttgtaagtga gttcacttaa atttctatac aagaaaaaga aataatctaa 
003061 ctgttaatga tgcataagca taagcttgtc aatgattact ttaccatatg tcatggattt 
003121 tttctgtgta ctccgttttg aatggatatt gcaagtgagt tcagttaaat gtctatacca 
003181 aaaaaaactg ttaattgtgc ataagcataa gcttatcggg gtagtggatg gtgcatggag 
003241 gttcaatagg ctagcagaag ttgctgaaac tgtatacatg catgtgcaat gagatatgaa 
003301 cattatgatg tgtatggact acaatctgga tccactcagc agatatgaat agatgaaaca 
003361 gggtaataac agaatatgga gtatagaaaa tgtctatatt acagaaatag ttataggact 
003421 atcgagaggt ttagacaggt ggataactat ggtgcttatg ttcttatgtc aagtcttgtc 
003481 ttccaagtgt tctgtgacct catgcagatc tacaaatgca tattctcaca acattaaaat 
003541 ttggtacaag taatctttta aaattattcc ttcacaattt ctttggaaaa tgttaagaac 
003601 actgctttgt attatttgga tgatgtagca tttcacattt tagtctatct cgtattctaa 
003661 tttatcttac tggaccatag attcccatga caggttattt gtgtggagaa ctttaaagat 
003721 tctatacaga gagaatttac tttcgtcttt cttcaaatca ctttctctgt acagcatttg 
003781 caaattttca ggccgtttta cttcaatctt ccactacacc atgtttcttt tttagagagc 
003841 ataagacaca cacacacaca cacacaaaca cattcttcca catacattca caccgtgtgt 
003901 gcgtgtaagc accctatgca cacacaaggc ttcacccagg acatgctttc tctcttaatc 
003961 cacacgtgtg catgctccat gcttcttcaa aattagtttg tcactaatct gtgtttatgg 
004021 tctccttatg caggtgccct atacggcaga ccaagatatg ttcagcaaag acagtatata 
004081 tgaagatttc tgtgtggacg atgttgatct tagtttcgaa aattatgagg aactatttgg 
004141 cacctcccat attcaaacag agcaactgtt tgatgatgct gggatcgaca gttactttga 
004201 atcgaaggaa ataccttctg gaaactctga tgaggtttgt agtttactct taatggttcc 
004261 tttttaagaa gtaagcttca attccacagt aacattcatt tgtaggtttt ctcgcaactc 
004321 ctgatcttct ttgtttcacc aattcaactt gccctgcaca tctttattgc ttgcaggctt 
004381 ttctcttggt tcgatttctc agatatatgt tatttatttg acctggtttg agtcaaattt 
004441 atctttcatt aaagataaat tattaggtgt taaatctctg tacaagagga gtcagcattt 
004501 ggattaataa ttaaattact ctcgtctctc ccaagtttat catttcagtc catggtctca 
004561 tccttctctt agatccctcc cctttagttg ttccttccct gctctccttg gaactgatat 
004621 attcgcagct cccatgttca agaagcaaaa gatggaagtt cttaattagt gtttctggtc 
004681 tttgtgttta tgaaacaaac aaaactatga ctgaaaatgg taatcagtat acattctcaa 
004741 atgcagcagt tcatttgtaa tccatttgtt tggaaattca tgttgtattt agttttgtct 
004801 ggggcttatt ggagttaact ttcagcattt atattcatta ttatcttttc agcagcccaa 
004861 gctgatgcag ccagtgacca gcaatgcagt atctgctgat tcagggatgt cgatcccagg 
004921 agccaaaggt gattccagtc tttgtatacc tgtgaggcaa gctaggtcca gtatctctct 
004981 ttcattttct ggtttgactg gtgagagcag tgctggagat taccaagatt gtggggtatc 
005041 accagtgctc cttatgggtg agcctccttg gcatcctcct ggccctgagg ggtcatttgc 
005101 tggagctacc agagacgatg ctatcacacg atacaaggag aagaagaaga gaagaaagta 
005161 agtgcatttc ttactaattt cgctactcat ttgcttaaac atttatgctg tataaccacg 
005221 taagaattct ataataaatt tgtggctgca aaagaactca aagagaaatt gtagcttgta 
005281 aacttttcgg cacaacctct actttacaca tttggtaaag agtgcttgta tcgttgagtt 
005341 tcatgaaaga agacacatgg aagtagtttt catggaagtt aaattttgag tttttggaaa 
005401 catcagtttt tgttacccta gttttacagt aggtagaagt aaaattacct taactctgta 
005461 tctttttact tacaccaaaa atgtttttgg taggtaactg catcacataa aaacatgctg 
005521 aagattttct gcttgaagat aacttattgc taccttttca ttcagagagc taataacttc 
005581 ttgtttcttg ccttctcttc taatatgtca gtccactgat gctaacatgc tatatttcta 
005641 gcataccaat tgcctccttt ttgacagcta gctgattatc ttttctcatg gcttctcttg 
005701 acagatttga caagaaaatc aggtatgcat ctcgcaaggc tagggcagat gtgagaaaaa 
005761 gagtcaaggg ccggtttgtt aaggctggtg aagcatacga ctacgatcca ctctgtgaaa 
005821 cgaggagcta ctgaacacaa taaaacatta tccaagtgtt aggttagcaa gcatcaacca 
005881 atgcttgttg tggctggcag gaaggcactc atactacaaa caatgtggca ggcctgcctc 
005941 taaaaacaac aaaaaaaaca gagcaatcaa ggggacaaaa aggacaaaaa gatttgaatt 
006001 tgggaaattt ttcagatgct accccctcct ttttcttctg tacagtggag ggaatttgca 
006061 tctttctgtt gctttcggga ggagcgattt gagtcgctgc ccaccttttg tgaattaatc 
006121 ttgatacagc tgaacaaact tcacttgcat ttttatctcc tttctactaa ccagagcatc 
006181 cacctaccct tgctgtggtg tttttggtgg tatgcttcca gattggacta ttagcaagac 
006241 aaggatggat gtagtcgtga aatcttctgc tgctctattt attgttatgt aaaatctgct 
006301 gtaatccgga gtttattctg caactctgca tgtgtaaata ccagatcaga ataaactggt 
006361 agatgtaaag ttttctttat tttctcaagt cgatgacatt ggaacccatg taaccggcca 
006421 ccaacttttt tgtttcacta tgctcaaata ttcgaaaact tcagactggc ttaatgctat 
006481 tatttgtact aagcatatgc ttgaatatgc ggtccttttt gttacaagta atattctttt 
006541 tgtggttgat ttgacctttt 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK253130 FLbaf114k16 2307
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ905872 whthkles39d08 741
more... (Total Hit Count: 17 )
/rice/oryzabase