cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072074     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0194900 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 4,795,629 -  4,801,510  ( - );   5,882(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,795,629 -  4,795,943 ( - );   315 (bp)
Exon 2 Location 4,796,041 -  4,796,179 ( - );   139 (bp)
Exon 3 Location 4,796,291 -  4,796,535 ( - );   245 (bp)
Exon 4 Location 4,796,666 -  4,796,984 ( - );   319 (bp)
Exon 5 Location 4,797,324 -  4,797,548 ( - );   225 (bp)
Exon 6 Location 4,797,637 -  4,797,803 ( - );   167 (bp)
Exon 7 Location 4,797,886 -  4,798,002 ( - );   117 (bp)
Exon 8 Location 4,798,087 -  4,798,260 ( - );   174 (bp)
Exon 9 Location 4,798,357 -  4,798,452 ( - );   96 (bp)
Exon 10 Location 4,798,535 -  4,798,751 ( - );   217 (bp)
Exon 11 Location 4,798,847 -  4,798,965 ( - );   119 (bp)
Exon 12 Location 4,799,115 -  4,799,307 ( - );   193 (bp)
Exon 13 Location 4,799,391 -  4,799,542 ( - );   152 (bp)
Exon 14 Location 4,799,632 -  4,799,752 ( - );   121 (bp)
Exon 15 Location 4,800,164 -  4,800,274 ( - );   111 (bp)
Exon 16 Location 4,801,441 -  4,801,510 ( - );   70 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.1 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.2 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.3 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.4 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.5 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.6 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.7 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ
Os06g0194900 Os06t0194900-01 208031 J013116D04 632 LOC_Os06g09450.8 AK072074 33810 AP008212.2 255676632 BAF18961.1 113595087 NC_008399.2 297606578 NM_001063582.1 115466895 NP_001057047.1 115466896 P30298 SUS2_ORYSJ


Chromosome: 6 ,  position: 4,795,629 - 4,801,510 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aactatttat tggtccttct ggatctcgga gaaaccctcc attcgtttgc tcgtctctga 
000061 ccaccattgg gtatgttgct tccattgcca aactgttccc ttttacccat aggctgattg 
000121 atcttggctg tgtgattttt tgcttgggtt tttgagctga ttcagcggcg cttgcagcct 
000181 cttgatcgtg gtcttggctc gcccatttct tgcgattctt tggtgggtcg tcagctgaat 
000241 cttgcaggag tttttgctga catgttcttg ggtttactgc tttcggtaaa tctgaaccaa 
000301 gaggggggtt tctgctgcag tttagtgggt ttactatgag cggattcggg gtttcgagga 
000361 aaaccggcaa aaaacctcaa atcctcgacc tttagttttg ctgccacgtt gctccgcccc 
000421 attgcagagt tctttttgcc cccaaatttt tttttacttg gtgcagtaag aatcgcgcct 
000481 cagtgatttt ctcgactcgt agtccgttga tactgtgtct tgcttatcac ttgttctgct 
000541 taatcttttt tgcttcctga ggaatgtctt ggtgcctgtc ggtggatggc gaaccaaaaa 
000601 tgaagggttt tttttttttg aactgagaaa aatctttggg tttttggttg gattctttca 
000661 tggagtcgcg accttccgta ttcttctctt tgatctcccc gcttgcggat tcataatatt 
000721 cggaacttca tgttggctct gcttaatctg tagccaaatc ttcatatctc cagggatctt 
000781 tcgctctgtc ctatcggatt taggaattag gatctaactg gtgctaatac taaagggtaa 
000841 tttggaacca tgccattata attttgcaaa gtttgagata tgccatcggt atctcaatga 
000901 tacttactaa aacccaacaa atccatttga taaagctggt tcttttatcc ctttgaaaac 
000961 attgtcagag tatattggtt caggttgatt tattttgaat cagtactcgc actctgcttc 
001021 gtaaaccata gatgctttca gttgtgtaga tgaaacagct gtttttagtt atgttttgat 
001081 cttccaatgc ttttgtgtga tgttattagt gttgatttag catggctttc ctgttcagag 
001141 atagtcttgc aatgcttagt gatggctgtt gactaattat tcttgtgcaa gtgagtggtt 
001201 ttggtacgtg ttgctaagtg taacctttct ttgcagttcc tgaaattgag tcatggctgc 
001261 caagctagct cgcctccaca gtctccgcga acgcctcggt gccaccttct cgtctcatcc 
001321 caatgagttg attgcactct tctctaggtg aagatctcaa tataatatct tgtgtcttct 
001381 tggaacctgc tactaattgt tttgagtttt caatgatttt atccatacag ttggttagtt 
001441 cttagtcaac ccagatgtga aacgataaca tgttagtatg ttacaaattc ttagctgaca 
001501 aggttatgca tctctttagt tttaatgatg gtatctataa taatctgtga tgagctctaa 
001561 catttttgtc ttgagtcatg aatcttagat gatgttgaaa tattgtttgt tcatagctag 
001621 attaagtaca gatcatgtgg tcttaaaaat aagaagtaaa aatcaggttt atgtggtagt 
001681 gccattaaca tagttcagcc gcagaaagga tgtgagatct aagcattggt tctatttctt 
001741 aaatatcact ctatgcaggt atgttaacca gggaaaggga atgctccagc gtcaccagct 
001801 gcttgcggag ttcgatgcct tgatcgaagc tgacaaagag aaatatgctc cctttgaaga 
001861 cattctccgg gctgctcagg taaatttggc aatgagccag gatggttatg atagtcaact 
001921 caaagtcaaa taccagtctt tctaacttac ttccttgact gtatgtagga agccattgtg 
001981 ctgccgccct gggttgcact ggccatcagg ccaaggcctg gtgtctggga ctacattcgg 
002041 gtgaatgtaa gtgagttggc agtggaagag ctgagtgttt ctgagtactt ggcattcaag 
002101 gaacagcttg ttgatggaca gtaagtacca gaacgacgat ttgcagatta taactgaagc 
002161 aaaataacag tgactgaatt ttacttctgt ttttcttaaa cagcaccaac agcaactttg 
002221 ttcttgagct tgattttgag cccttcaatg cctccttccc gcgcccgtcc atgtccaagt 
002281 ccatcggaaa tggggtgcag ttccttaacc gtcacctgtc gtccaagttg ttccaggaca 
002341 aggagagcct ctaccccttg ctgaacttcc tgaaagccca taaccacaag ggcacggtaa 
002401 gcttccaatt tgtggaacat accaaatgct tttatactag atgttttttc ttgtgtgaat 
002461 tgctttaaat gttagtcctt tagaaaccca cttgacattc tctgtaagtt ccaccaaatg 
002521 acgggatccg aattttctat tacagacaat gatgctgaat gacagaattc agagccttcg 
002581 tgggctccaa tcatccctta gaaaggcaga agaatatctg atgggcattc ctcaagacac 
002641 gccctactcg gagttcaacc acaggtgatt actttattat ttctccttat catatagccc 
002701 atgttatact actgcaaatg gaataattcc ttacaatgtg attcatgatt tgaatacagg 
002761 ttccaagagc tcggtttgga gaagggttgg ggtgactgtg caaagcgtgt gcttgacacc 
002821 atccacttgc ttcttgacct tcttgaggcc cctgatccgg ccaacttgga gaagttcctt 
002881 ggaactattc caatgatgtt caatgttgtt atcctgtctc cgcatggata ctttgcccaa 
002941 tccaatgtgt tgggataccc tgatactggt ggtcaggtag agctttttaa caaattttcc 
003001 ccttatatac agtacttcaa atatttctag ttttgacctg ttattctgtt gtttgcaggt 
003061 tgtgtacatt ttggaccaag tccgcgcttt ggagaatgag atgcttttga ggatcaagca 
003121 gcaaggcctt gatatcacac ctaagatcct cattgtatgt tcaagatgtt ggtcttgaat 
003181 gtttcaagtt ttaaacactt ctcagtgcga attgtagagt aacgtgcgga catgatttta 
003241 cttgatgcag gtaaccaggc tgttgcctga tgctgttggt actacatgcg gccagcgtgt 
003301 ggagaaggtt attggaactg agcacactga cattcttcgt gttccattca ggagtgagaa 
003361 tggtatcctc cgcaagtgga tctcccgttt tgatgtctgg ccattcctgg aaacatacac 
003421 tgaggtaaat ggtttatctg acaacgtcct tcagagctga gcacaaacca tgaattctga 
003481 gagctcatct tttttttttt ggttgcagga tgttgcaaac gaaattatga gggaaatgca 
003541 agccaaacct gatctcatca ttggcaatta cagtgatgga aaccttgttg ccactctgct 
003601 ggctcacaaa ttaggagtta cccaggtatg tttggttgta aaccactcct ttaaatattt 
003661 ctttcattaa gtcaattact tatgatttct cttctacatg gatacagtgt accattgctc 
003721 atgccttgga gaaaaccaaa taccccaact cagacatata cttggacaag tttgacagcc 
003781 agtaccactt ctcatgccaa ttcactgctg atcttatcgc catgaatcac actgatttca 
003841 tcatcaccag tacattccaa gaaattgctg gaaggtaaaa ttttctaaag agcagtagaa 
003901 tattgctgcg ttgtgccaac acctaaacgg gtatctgatg tttgtttcct ctgtttcttc 
003961 agcaaggaca ctgtggggca gtatgaatca cacattgcat tcacccttcc tgggctttac 
004021 cgagttgtgc atggcataga tgtttttgat cccaagttca acattgtctc tcctggagct 
004081 gacatgagtg tctacttccc gtacaccgag gctgacaaga ggctcactgc tttccaccct 
004141 gaaattgagg agcttctcta cagtgaagtc gagaacgatg aacacaagtg agtactgaac 
004201 tgctggttcc gtccctgtta ttcacctacc atgtaacaaa taattaaaca ctgatttgtg 
004261 tgtttggtct agctttggct cttcagtcta ctaagtgcca tgcactagaa ctttgtagat 
004321 ttgaactgca attcttaatt ttctcactcc ttagtagacc acaataataa ttattgtgtc 
004381 tgacccagct agtttacaat agtgacttca atgcttgttt tttccccttg aacaattgtt 
004441 tactttctag cagtggagtt tggcatctaa acttgaatac acgctgttct tttttgtgta 
004501 taaaatgttt atttaatgtt ctgcaggttt gtattgaagg acaagaacaa gccaatcatc 
004561 ttctccatgg ctcgtcttga ccgagtgaag aacatgacag gtctggttga gatgtatggt 
004621 aagaatgcac atctcaggga tttggcaaac cttgtgattg tttgtggtga ccacggcaat 
004681 cagtccaagg acagggagga gcaggctgag ttcaagaaga tgtacggtct cattgaccag 
004741 tacaagttga aggggcatat ccgctggatc tcagctcaga tgaaccgtgt tcgtaacggg 
004801 gagttgtacc gatacatttg tgacaccaag ggagtctttg tccaggtata tacatacgct 
004861 gtcatattct actgctatat ttctattctg agcttccagt agcaaatgat ttctactatt 
004921 tgtaaagaac agccttgtgc ttgagactaa aactgctttt aaaattgttt tttagcctgc 
004981 attctatgaa gcgtttggtc tgactgtcat cgaagccatg acatgtggtt tgccaacaat 
005041 cgcaacatgc catggtggcc ctgctgagat tattgttgat ggggtgtctg gtctgcacat 
005101 tgatccttac cacagtgaca aggctgctga tatcttggtc aacttctttg agaagtgcaa 
005161 gcaggattca acctactggg acaatatttc acagggaggt ctgcagagga tttacgagaa 
005221 gtatgtattt catgatctgc aaatatataa catttttttt ttacgattga catataactg 
005281 tagaaatcat gtgtccaatc tatattgatc ctacaaattt ggacttgtca ggtacacctg 
005341 gaagctgtac tctgagaggc tgatgacctt gactggtgta tacggattct ggaagtacgt 
005401 aagcaacctt gagaggcgcg agactcgccg ttacattgag atgttctatg ctctgaaata 
005461 ccgcagcctg gtaagttact ctcgctgttc aacagcttgt taatttcagt attattgcac 
005521 tgagcatatc tctgaattct gttgctacat ttctttgttg aatccaggcc agcgccgtcc 
005581 cattggctgt cgatggagag agcacatcca agtaatggag gggaaaatat gcatcttcag 
005641 caggagaagc cgtcagctgc attcgaattt gataattttc tgtagttgtc atttggcatc 
005701 catgtttgcc atggatgtgt actatgtcta aggtttcagt acttttgcga gattttgggc 
005761 agtgcttgcc tcaaataaac gccggttcct ggtgtttatc gttcagaatt caatgcaatg 
005821 ttttattgcc gcgcttcctc aatctgtcat gttgaatgac cactccctag tgccctactg 
005881 tt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248622 FLbaf144f05 3273
more... (Total Hit Count: 53 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BE416489 MUG011.C08R990317 999
more... (Total Hit Count: 644 )
/rice/oryzabase