cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072067     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0603600 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 24,752,547 -  24,756,968  ( - );   4,422(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,752,547 -  24,753,222 ( - );   676 (bp)
Exon 2 Location 24,756,265 -  24,756,397 ( - );   133 (bp)
Exon 3 Location 24,756,499 -  24,756,968 ( - );   470 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os06g0603600 Os06t0603600-01 J013114F06 208022 J013114F06 10530 LOC_Os06g40120.1 AK072067 33903 AP008212.2 255676632 BAF19927.1 113596053 NC_008399.2 297606578 NM_001064548.1 115468827 NP_001058013.1 115468828 Q69XJ0 SPX1_ORYSJ


Chromosome: 6 ,  position: 24,752,547 - 24,756,968 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attcccatcg tctccttcct cctctccccc gcatatcctc cgcctccctt tcccccctct 
000061 cctcctcaac cctatttcac caccacctcc accgctgccg cggcgagaat tcgatcggtt 
000121 cttggcagcc gtagtgcagt tttgtgcagt tttcttctct cttgttgttg aggatgaagt 
000181 ttgggaagag cctgagtagc cagatcgtgg agacgctccc ggagtggcgg gacaagttct 
000241 tgtcgtacaa ggatctcaag aagcggctca agctgattgg tgggggtggg ggtggggagg 
000301 agaggcaggc gaagcgggca cgcgttgcag cggatggcgg cgaggaggag gccgccgccg 
000361 cggcgatgac gcccgaggag gcgggcttca tgcggctcct ggaggccgag ctcgacaagt 
000421 tcaactcctt cttcgtcgag aaggaggagg aatacatcat ccgccagaag gtgcggcggt 
000481 gatcgatcgc catttgtgct tcggttcgaa tcttcttctt cttctcgagt ttcttggttc 
000541 tgatttggga aatcgacgct gtgtgtgtca ggagctgcag gacagggtgg cgagggcggc 
000601 ggggagggag tcgaaggagg agctgatgcg ggtgcgcaag gagatcgtcg acttccatgg 
000661 cgagatggtg ctgctcgaga actacagcgc cctcaactac accggtgagt gtcccagtcc 
000721 acgcacttcc ccacccgccg catcgcaaca cccgtagttt tcagttttca catgtctttc 
000781 actaattata ttattgcaaa gggttcgtta gctgttgctt atgttgtttg ttaactcttc 
000841 ttggaatgtt ctgtgaattg gggaggtagt aataagagag gttggaaaaa ctggttaaca 
000901 tagtagttta gtatccttat tagaattttt tttgattggg gaggtagtaa gagaggtaga 
000961 aaaaaattgg ttaatatagt agtttattag tgttctcaga aaggtaattt agcacgcatc 
001021 atagagcagg caggagtaat ggaagtttcc tgaacatagg tcaagaaata ggcgacttat 
001081 tgtggttgtg ggcagctatg gtttcgcatg tccgctacgc agcactcgtg tcgctgtcaa 
001141 ggagaatgga tccttgtatg gcaattcagt gcgcacacgt ttttgctctc tattgatgaa 
001201 tggatacttg aggttgggct cagcagctaa tgttgggggc actgtatata aacagtttgt 
001261 tttctcgtgc gagacaagca atttatagta tggccacatg agtgctaaca ttgtttatgg 
001321 tggagcactc tgttcctttc tgctgcaatt tgaaatggta acagtgtgtc atgcatcctt 
001381 ctatcgtgaa cagattttcc tttgactcgc tataagaagg tactccctcc atcccaagat 
001441 ataagtattt ctagctatga atttggacaa ctgtgtccag attcatagcc aaaagttgct 
001501 atattttggg tcggaggtag tatataacaa ttgtaaacaa ataggtcaaa aaatttatcc 
001561 ttttcaacag gctgtaatac agttcgtcac caaccaaatg gtgcatagaa gtttctacaa 
001621 gaaatatttg actaataatt gacttggtat cagatattat cttggcaata tttttcacta 
001681 aaaatacagt ctgattcagg gttcacatga tgatgcagta gtgtgtagta tagtatagtg 
001741 accttgccct ctactgcagt gttccatggt agtctggtag attatctgct tccttacctg 
001801 tccactggca gcatatgcag tgcatatgca aagtaatgat gtacaactgt actgctttgc 
001861 tatttttcgg ttggcctttg ttatgcctta atgctgagtg gttgattttc ctctttatca 
001921 atgtgagatt gtgagtggct tctaatatct ggaaattttc attcctagcc tgggggttac 
001981 aggttaatca tacaactcaa ttaaatctag gtcggtttct gttggcagtt gggacgaaaa 
002041 ttactcactt gaatatgatg ttagagcatc atttctatca taagctccat agttgtttta 
002101 gaaatattga tttagtaagc agggcagcgt atgcctcccc tcaccaaatc caaaattaaa 
002161 ttcactatgc atcatttcaa agattgcctg aaattccgta gatgcattaa taatactata 
002221 tgcacaattt gcaaaaagtt gggtgtacag tcatctgcag ttagataaat aaattaactt 
002281 gttctaaatt cccaggaagc attcacgcct gaaatactgt agtagacaag tttgcaggct 
002341 aatttttgca atatgttata aactatttca aagacattta tagtttttat ttttagtacg 
002401 gcgcaaaata catatttggt aaacgggggc acatgcttca ttgccaaata tttttcatca 
002461 gttgacgagt cttctgatta aaagtcatgc ctaacgaaac aagaaagtgc aattcatgtt 
002521 acgtttgtga tttgcgttcc agctattgaa aataaaagaa attagttttg catatcatct 
002581 aaagatatgg tattgctcaa cagaaatttg tgtagctaat ttcatgatct tcattagttg 
002641 actcttttat gcttagctga gatgtgattg atggtcctaa ctttgcatgc tattcgtcat 
002701 cctagtgctt ctttagtgga ctacttttta aagtcagttt tttgctagct gcaatgaact 
002761 tgaggctaat gagtaccttg gttactgtgt tattatgtgc ttgtggacaa tggtttcggt 
002821 ggacgtactg tgaaccagtg acctgtgacc actctttgta tcagcatctt gcttttttct 
002881 gtttttcctt tgcaagatgc aagttgatgg tgtcacagac ctatatggct atattgggcc 
002941 aggttaacac acactaattt ggggagtcga cttttcgaat gtgaacacat tctaaagatg 
003001 aggatgtcac acaaaaagta aatttgttgt tttgcatcat gcaagcttag tatgttttgc 
003061 tcaaccaaca gaacagaatg caagttgcat gcttcttata tgcctgaagc cctgaactgg 
003121 aatgtgttac tgttaataac catcattggt gctttgcaac tgcacaatac atttctgctg 
003181 ccattttgct catatcatgc tggtctattt cgtatgctta tgcgaataag aaactatatt 
003241 agtgttgtac aactgtctga aagttttctg gttatcattt gcaatatgaa atgttatcct 
003301 atctcaacca aattgactag catctccttt agtggcaatg tggtaccctt tacacatcac 
003361 taccatgcta gctttcctga tatgaaaatt tactggacca tgcctcacga gaattcaggt 
003421 tcattagcta gggatgtgac aagttacaaa tggttttggt gcctcagaca gacagatgcc 
003481 acagcctgta agccatacaa gggcgtattt tctatttcca tcagtttggg cagatatcac 
003541 ctaaactaaa atgtttagtc tgattgaacc actagcaata gctcatgtca gttatccctg 
003601 tttattctct tgagggaaaa ctctttaaga aaagttgtga tattggaagt ggattggatg 
003661 ctatttgaaa tttggaagat gtaactcttg tactttgttt tagattttca ccagttgata 
003721 cttacgttcc atgttgctgt ttacaggatt agttaagatt ctcaagaagt atgacaagag 
003781 gactggggct ctgatccgtc tgcctttcat ccagaaagtg ctacagcagc ctttcttcac 
003841 cactgacctc ctgtacaagc ttgtgaaaca gtgtgaggcc atgctggacc agcttctacc 
003901 atcaaacgaa ctgtctgtat cgagtgaaga tgggagaggc gatagcacta acgaggacaa 
003961 gccttcgaat cccagttcat ccttggttaa tggtggcact attccagagt tagatgagat 
004021 cgagtacatg gaaagcatgt atatgaaggg cacggtcgcg gcgcttaggt ctctgaagga 
004081 gatccgaagc ggaagctcta ctgttagtgc attctcatta ccacctctcc agggcgacag 
004141 ttcgccagag gagcagcagg aactgtggaa taagattccg gtgattgagc aggccgccaa 
004201 atgacacgac cggcatttca ctacatggtt atgtacactg catgaccttg atcttgacat 
004261 ttgctggaga tagtaccggg gatctcattc ccctgtcata tattcagtaa tttgtatgat 
004321 tccaggattc ctaacagttg taaaatggtg gacatgttca gtatacattg taaaatcata 
004381 gaaacccatc ataaccatca gacagaactg agatgttttg at

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ672177 whkv8l10 759
more... (Total Hit Count: 3 )
/rice/oryzabase