cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066933     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0178900 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 3,918,533 -  3,923,303  ( + ) ;   4,771(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,918,533 -  3,918,894 ( + ) ;   362 (bp)
Exon 2 Location 3,920,289 -  3,920,863 ( + ) ;   575 (bp)
Exon 3 Location 3,921,005 -  3,921,384 ( + ) ;   380 (bp)
Exon 4 Location 3,921,487 -  3,921,573 ( + ) ;   87 (bp)
Exon 5 Location 3,921,659 -  3,921,989 ( + ) ;   331 (bp)
Exon 6 Location 3,922,122 -  3,922,532 ( + ) ;   411 (bp)
Exon 7 Location 3,922,616 -  3,922,675 ( + ) ;   60 (bp)
Exon 8 Location 3,922,772 -  3,923,303 ( + ) ;   532 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0178900 Os06t0178900-01 J013091F19 202402 J013091F19 2250 LOC_Os06g08080.1 AK066933 11668 AP008212.2 255676632 BAF18880.1 113595006 NC_008399.2 297606578 NM_001063501.1 115466733 NP_001056966.1 115466734


Chromosome: 6 ,  position: 3,918,533 - 3,923,303 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gagtgtgcag agcgagagac gcgtcacctc ctccccgccg ccgccgccgc cgcctcgcct 
000061 ccgttgcaac cgtagtaggg ttagggtttt cgtggtgggc gccgccgcca tggcgatcct 
000121 ctcggcgctc gggaccgagg tgttcatccc cgtcgcggcc gccgtcggcg tcgcgttcgc 
000181 cgtcgcgcag tggctgctcg tcgcgcgggt gaaggtcaac ccggcgcacg cggcggcggc 
000241 cgcggcgtcg ggggggagca agaacggcgg gtacggggac tacctcatcg aggaggagga 
000301 ggggctcaac gaccacaacg tcgtcgtcaa gtgccacgag atccagaccg ccatctccga 
000361 aggtgaatct ctctctccct ctcagatctg gccgcgtcgc ctggttcggc tagatctgat 
000421 cgttcccgtg gccgtttcgg ccgagacgat gcggctttcg cgcgttcttc gtggggatta 
000481 cttatattat taaatcattc ttaagtcatt tcgtatctgg gcgtatgatt ttgtcgatga 
000541 gcgcgacatt gcaggggcaa aatggttcgt tttttggttc tattctccct tgattagtta 
000601 gtttcaataa cgacgatctg atgggaaaac ttccaaaagc tcctcaaaaa agatggcttt 
000661 gtgaatgaag aagaatcatg aaaaatccga gatgaaccgc tgaagtgatg ttaaagattg 
000721 gaggttttag gcgatggaag ccaaatcttc tcgttggggc ttttggtttc tttgtggggg 
000781 ctgccaaata gtgctacttt gtccaaatat gtgctttcct gatattttag tctctcctgg 
000841 tttgccccaa atctgtattt tttctagtgg gggctcctcc tgtgttgata tgttttcttt 
000901 ttttgttttc gttagaattc acttttgtct atgccactga gtgggggctg gcaaatattt 
000961 ttctttgccc caagacggta gatctgcaca ttagttgggc taaatcgagg gttcagtaat 
001021 gagttctttt aatgcttgaa gcggtgctct taccctgtgt cggttttgta ggaaagatgt 
001081 agctttcagt agtagtacaa attctgcagt ggaaggcgcg tgagggatct gtctgtccca 
001141 acttaacaag ttgatctagt cagtattagg ctgacttaag ttttacatta atgtaaacct 
001201 gggctccaat cttctggtgc ccggtagatc tagtctggaa acgtaaggat accaagccat 
001261 atgtcaccaa cgtgtcagct tagcacatga cctatgaatt tgctgtcttc atcagtatgg 
001321 atggcttaat gctcttcaga tgcgtgtccc attagtgcgg tttgtttatg tatgtcacca 
001381 atcttggctc atgccttctt tctttgattg tgatggggac acaggaagag ctacttctgg 
001441 aatatctgct aggatttgga catggggctt gtcacttgct ctcgggtggt ttacggctta 
001501 tttttttcta gtatatatgt gcacatgctc ttcttccatt ttttgctgat gtcagaagat 
001561 aaaatccgac caaagcttat tatggtgttc agtgtcatgt catgtgcatt ggtttgacaa 
001621 atcaatattc tgtattattt ttcatagttt gtatgggaat tgcaatgtaa tttagcaaaa 
001681 ctttgcttat actgacacta agtcgtgttg aatgatatga ttttttttgt aacaattgcc 
001741 ttctttttat gagcaggagc aacatcattt ctcttcacgg agtaccaata tgttggtatc 
001801 ttcatgtcaa tcttcgctgt cgtgatcttc ctcttccttg gttcagtcga gggattcagt 
001861 acaaagagcc agccttgcac atacagcaag gacaagtact gcaagcctgc ccttttcaac 
001921 gcgctcttta gcactgcatc tttcttgctg ggagcgatca cctctttggt ctctggttac 
001981 cttggaatga agatcgccac atttgccaat gccagaacta ccctggaagc aaggaagggt 
002041 gttgggaagg catttatcat tgctttccgc tctggtgctg ttatgggctt cttgctggca 
002101 tcaagtggtc ttgtggttct ttacatcgcc attaatgtat ttaagttgta ttatggtgat 
002161 gactgggaag gtctttttga gtctatcact ggttatggtc ttggtggatc ttccatggct 
002221 ctcttcggaa gggttggtgg aggtatttac actaaggctg ctgatgtggg tgctgatctt 
002281 gttggcaagg ttgagaggaa catccctgaa gatgatccca ggaacccagc tgtgagtttt 
002341 ctcatctctt tgtcaggcta ttaattttat tttagggaag ttaaggggat aatcgtatca 
002401 gtcccgcagt attgtagtga ctattatagt tcatgatctt ccctctctga acttcctctt 
002461 cttgttttgc aggtgattgc tgacaatgtc ggtgacaatg ttggtgatat tgctggaatg 
002521 ggatcagatc tctttgggtc atacgccgaa tcatcctgtg ctgctcttgt tgttgcatct 
002581 atctcatctt ttggaatcaa ccatgatttc actgggatgt gctacccact gcttgtcagc 
002641 tctgttggca tcattgtttg tttgatcacc acactctttg caactgattt ctttgagatc 
002701 aaggcagtga aagaaattga acctgctctg aagaagcagc tcatcatctc cactgctttg 
002761 atgactgttg gtattgcaat aatcagctgg ttggcccttc cagcaaagtt caccatcttc 
002821 aattttggtg ctcagaagga agttaccaac tggtaaacta cttgtctaac tttctttgtt 
002881 tgtgaaatgt tgtctagttt tgttatttgt ttgtgaaatg tattctttct gattaatttg 
002941 ctgtggtttc acaggggctt gttcttctgc gttgcaattg gtctgtgggc tggtctgatc 
003001 attggttttg tgacagagta ctacactagc aatgcataca ggtaagaaac ctattagttt 
003061 ccaattatga tgtctttcac cattgttaca ttacatgttt taatccctac tgcttctttt 
003121 tggcagccct gtgcaagatg ttgcagattc ctgcagaact ggtgctgcca ctaatgtcat 
003181 atttggtctt gctctgggat acaaatcagt tatcatccca atttttgcta ttgctgtcag 
003241 catatatgtt agtttctcta ttgctgcaat gtacggcata gccgttgccg ctcttggcat 
003301 gctaagcacc attgcaacag gccttgccat tgatgcttat ggtcctatca gtgacaatgc 
003361 tggtggtatt gccgagatgg ctggtatgag ccacagaatc cgtgagagaa ctgatgccct 
003421 tgatgctgct ggcaacacaa ctgctgctat tgggaaggta caatcatgtg cttactcttg 
003481 atgagcattc ccaagctatt attagttaat taagcattag aattagtggg tgcttaggaa 
003541 gaactgttat gttggttctg tgatttgatc cttttatatt cttttgtagg gttttgccat 
003601 tggatcagct gctctggtgt cccttgcact ttttggtgcc ttcgtcagca gagctggagt 
003661 gaaggttgtt gatgtcctgt ctccaaaggt cttcatcggt ttgattgttg gagccatgct 
003721 cccgtactgg ttctctgcca tgaccatgaa gagtgttgga agtgccgccc tcaagatggt 
003781 tgaggaggtt cggaggcaat tcaactccat tcctgggcta atggagggaa ctggcaagcc 
003841 tgactatgcc acctgcgtca agatctccac tgatgcttcc atcaaggaga tgattccccc 
003901 tggtgctttg gtgatgctca cccccctcat cgtcggaact ctctttggtg tggagaccct 
003961 gtctggtgtt ctggctggtg ctcttgtttc cggagttcag gttggcatta tgttctctct 
004021 ccctcattat gtgcttgtgc gagtttgcta gttcaatgga tctataatct tcctcttctc 
004081 cagatcgcca tctcggcctc caacactggt ggcgcatggg ataacgcaaa gaagtacatt 
004141 gaggtaaatg ttcagaaaat cctgattgat catgttttgc aactcattat ccttcgcgag 
004201 acttaacttt acatcaactt gctccctgtt ttatttcagg ctggtgccag tgagcatgct 
004261 cggacccttg gtcccaaggg atcagactgc cacaaggccg ccgtgatcgg tgacaccatt 
004321 ggagaccccc tcaaggacac atcaggcccg tcgctcaaca tcctcatcaa gctcatggcc 
004381 gtcgagtccc ttgtgtttgc gcctttcttc gccacacacg gtggtctgct gttcaagtgg 
004441 ttctaagaac ataataccat tggcagcagc gctgaaatct tcgacggaca tcacgaataa 
004501 cgactgccag tgtacgttgt gcttgggaat cgcccgcacc gtttcttttt gggtctcatg 
004561 ttgtttcagg attgctgttg tcttatcttt ggcctcttgg gagttgttac cttagcctta 
004621 ctgttagctt cacttagaag agaccagagt ccagatgttc tcccatctct ggtgcgtgtc 
004681 tggcaaattt tcctcgtccc atgatgacga cgataatgtt tgaactcttg aacaatgaga 
004741 tgatgattgt tgcatgttag ttactggtgg t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248511 FLbaf35k03 3059
more... (Total Hit Count: 73 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ778621 whatl26k24 859
more... (Total Hit Count: 376 )
/rice/oryzabase