cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066777     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0354700 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 14,595,017 -  14,599,806  ( + ) ;   4,790(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 14,595,017 -  14,595,098 ( + ) ;   82 (bp)
Exon 2 Location 14,595,444 -  14,596,122 ( + ) ;   679 (bp)
Exon 3 Location 14,596,551 -  14,596,777 ( + ) ;   227 (bp)
Exon 4 Location 14,597,325 -  14,597,516 ( + ) ;   192 (bp)
Exon 5 Location 14,597,598 -  14,597,754 ( + ) ;   157 (bp)
Exon 6 Location 14,599,064 -  14,599,806 ( + ) ;   743 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0354700 Os06t0354700-01 202229 J013075L23 2102 LOC_Os06g24730.1 AK066777 1122 AP008212.2 255676632 BAF19507.1 113595633 NC_008399.2 297606578 NM_001064128.1 115467987 NP_001057593.1 115467988
Os06g0354700 Os06t0354700-01 202229 J013075L23 2102 LOC_Os06g24730.2 AK066777 1122 AP008212.2 255676632 BAF19507.1 113595633 NC_008399.2 297606578 NM_001064128.1 115467987 NP_001057593.1 115467988
Os06g0354700 Os06t0354700-01 202229 J013075L23 2102 LOC_Os06g24730.3 AK066777 1122 AP008212.2 255676632 BAF19507.1 113595633 NC_008399.2 297606578 NM_001064128.1 115467987 NP_001057593.1 115467988


Chromosome: 6 ,  position: 14,595,017 - 14,599,806 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ttctgagctc gcagttctac tagtttagtt tttgcgaagt gttcttctcc aaatcacctg 
000061 agaaataggt gtcgattttc aggtatgatt caccgatttc tcactaggag agagtaatct 
000121 gtaattaggt gtttgctatg tctttttttc ttcctgggga ctccctggca tgtgtgtact 
000181 actcgtgcgg ggaacagttc ccgggtttcg catgaattgc tggatttgga attggtttgc 
000241 tggctggtcg aagctcattt tcgctgtgta gattagtttt attctcgaga acttaaccca 
000301 tctgtttgat acagttaaaa ttttggtttc ggttctcccg atcaaattaa tctgaaggct 
000361 gatagttctt ggtttcagtt tttcgagttc gctcttttaa acgtatcttt cggtttatct 
000421 gttgcagaac tagcgtgcta gccactagtg tggccatgga agtggtttct tccagccact 
000481 cctgcttggc atttaaccga acacctagca gtgcttggag gtttccgggg aatggtcttg 
000541 gtccagggca tgcaaagctc actcggccaa gaagtgcaat tctttgtgtg cggtcaggga 
000601 cagcttcgaa tcctgctgat tctgggaaag ttcatgcgag ccatgggttc tatgtaagtg 
000661 atgtcgatgc agctctccaa gggatcccga agaaagtcgg tgagatcgag aagatgatca 
000721 ttccgagctt gccagaagga cctgaaagct ctctaattag tactggtttc tgggaatgga 
000781 agccgaagct gagtgtatat tatgaaaagt ctggcataga caatagcaag gcaccgtctg 
000841 tgctctttct accaggtttt ggagtgggaa cgttccattt tgagaagcaa ttgaaggatc 
000901 ttggccgtga ttacaaagta tggacaatgg attttctagg gcagggcatg tcgttgccat 
000961 gtgaagatcc tgctcctaag agcacatcag gagagctaga tgaggacaca tattggggtt 
001021 ttggacaaga attacaacca tgggcggagg agttggtgta ttcgatagat ttgtggcgtg 
001081 accaagttca gcattttatt gaagaggtac ttctttcaac tattttctgt gtagttttat 
001141 gtttactttg ctaaaaaaat atcatcttta gttcacaaat cctagtatgc tttgcactct 
001201 ttgaagggcc tgcaataata gctatttatt agttattgaa gattcttgaa tctcacaaac 
001261 ttcagcgttt catattcggt taatagaata taagaaccgt tatgttgccc aaagcaggtg 
001321 ccctgttttt tggcacacac acttgtaaca cattctttta ttccagtatc tagaatagag 
001381 agcaaaggag ccctgttccc aatctcatat agcaggtttg acatttgtgt tattatgtgt 
001441 aatgccaaag ttcttaagtt tacttatcca taacagtcct accatgagat tcatatcata 
001501 tgtttcttat gctaattttg taaccttctt tcaggttatt ggtgaaccag tatatattgt 
001561 ggggaactct ctgggaggtt ttgtttctct atatcttgct gcatcctgtc cacaccttgt 
001621 aaagggtgtc acattactta atgcaacccc attttgggga ttccttccca accctgctac 
001681 atctcctcgc ttgtcgaaga tttttccatg ggctgggaca tttccacttc catcgtttgt 
001741 gaggaaactt actgaaacag tgtatgtgct accctttagg ttttgggaaa cacatgtgca 
001801 tattgatatt gaataatctt aaatttatcc cttctgctaa ttattggtgt actatttttt 
001861 ttcattataa tgaatgcatg gaatgcaaaa gttttatgat acttgtagca aggcatagca 
001921 tctgtagatt gctacctttt gttttgacag aaattgattg catacttcac cagtgaagaa 
001981 acgatttaga ctatgtttag tttgcatatg gtactataag tatagctaat aattgttttt 
002041 tcaaaaaaaa aacgtgtttt tttataaaat cacacctaga tataaagtat atttctgtat 
002101 gtcattttct gccattattt ttccttttac attgtcattc ctctctcatg ttaggatggt 
002161 aggctgtgca atgtattggt gttttaacag attaaacaag ctgttattca atagcaattg 
002221 tgtggtccct gcatcattta gaactatgca agttatccat gtggtgatat aaatttggtg 
002281 gatctcattt aatatctttt tggtgcaggt ggcagaaaat aagtgatcca agaagtatac 
002341 agggcatact caagcaagta tatgctgacc actcaacgaa tgtggacatg gtgttctcgc 
002401 gtattataga gacaacacaa catccagcag ctgctgcatc atttgcatcc attatgtgtg 
002461 ctccaaaggg acaaatatcc ttcgaagaag ctctatctag gtaaactgga tatactattt 
002521 gatgaattgc catgttgctt acaaaatacg attttgtatt tttacatttc ataatctgca 
002581 ggtgccaaag gcagggtatt cccatatctc ttatgtatgg gagagaagat ccttgggtta 
002641 gacctatttg gggtattaaa gtgaaacagc aggtgccaga atcaccgtat tacgaaatca 
002701 gtcctgctgg tcactgccct catgatgagg ttcctgaggt aaaacattca ttgtgtttgg 
002761 aaataaagct cgtcatattt agtttgtacc agatagttga tagttcattt tgtagccgtg 
002821 cattctgttt tgggtggata ctgtggctgg tgggctgtgt gtgtttaaga aaggtcatgt 
002881 tctctgaata tcatccatgt tgattacaca taagaaacta tggaacaaaa actggaggaa 
002941 atttgtatca gtatctagtt tgttttgacc aacatttgaa atctctattt aaatctagaa 
003001 atttcggtat acaaccaatg gccattatat gggactgcag ccttagctat gagtttctac 
003061 aaagataggc agctgtatct tagaagctaa atgctattag tggaatcaga tctggatcag 
003121 cacaacaggt tgtcagatgc tatctttagg tggggtacca gggaagccca agaatcacaa 
003181 ctgtttgcga attcctcatg ataggatttt ctgctagggc aatgaatatg gattgtacca 
003241 tttgtaagct taacattttt tctgcagttt ttgtttaatt ctgtagcatg catttgatac 
003301 aaagacacct tggggcacta atttttttat ggttgagtgt gtttaagttc cctagttttc 
003361 tcctttgaag ttacaagaca ttatatggtt gaggttgtag gttccaggaa aaagccttgc 
003421 ctggtggatc actgggcgcc ttcaggcatc gtaacccctt ggggcggtgc gagggtacct 
003481 ctcttcctcg gcaagttttc tctaggtgaa aaccacatct ttgttagaag gtgggcgatg 
003541 gtgccgtcct tgatggcgtg acctccgtgg tggcatcgtt ttcgaagtct cgtctttgtg 
003601 gtgttgtcgt gggcctagcg gcgatcagcc acgcatagcg agggtcgttt tggtgctagg 
003661 cttcactcag tggtttgtgc ttttgtggtt agcgtgtggt tttaggacgt gccctgtggt 
003721 gcgcatccgt cctcgacagc tttctgttgt gttttttctt gtaacttttt ctccttaatg 
003781 cattcggatg gcctcctttg gccttcccgg cgaaaaaaag tggcaagaca tgttctatgt 
003841 tttttttctt tcctttttta atctgtagag ttagttcaat tttctgcatt tatataaaga 
003901 tatatgtttc acattttact cctcacatat tcctattttt gagagtgcct tcttctgttt 
003961 aatcattcat gaaaactgct taaggattgt ctctgtgatg acaaaatata tatatgtcct 
004021 ttacatatga ttttggtctt tggacaggtt ataaactact tactcagagg atggctaaag 
004081 aatgtcgaat ctgagggttc agttgcagtt ccatttcttg aagaacccag ctatgctgaa 
004141 aatggtgtat caagggagct ggaatttgtt aggggaggat caaaaaaatc tgtccatgtg 
004201 cgactctttg gttctaaaat ttccttatgg agccaacttc gttcgctttt gaagtccaac 
004261 acatgggtaa tatctagata agatagattg tccatacaag tatgatgtta gaagcttcag 
004321 tcaaatattg tattcattat tctttattta aagtagtcag tttgatgtct agaactctag 
004381 atatacccag tagacaggat tttgaacatt tctagtggat gtaaaaatag caagcttcaa 
004441 aattcttgtg ccagaacaaa gggagtagcc aagtttagtc cttgtttgta taggctatca 
004501 atctttatca agttcaaatt gtgatttctg tataagcaga aaaattggta tcatatgcca 
004561 ttgttatagg atccacactt cactgtcctt agaactttca gttctatatc aactcaggtg 
004621 ctttttttca aaaaggtaga atggaccatg tggaattgtg gattatgttg cggcttaatg 
004681 gataactcgt cattttgaca ggtttaagtt atgttagatt gttaggtgca attttgtcgg 
004741 aattgtagat ccgccattgt gttaatatgt gaaagaaaca gcgaaagtgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ470744 baal26f22 596
more... (Total Hit Count: 16 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ874302 whthls15o07 704
more... (Total Hit Count: 75 )
/rice/oryzabase