cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066172     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0112200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 691,775 -  694,656  ( + ) ;   2,882(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 691,775 -  691,927 ( + ) ;   153 (bp)
Exon 2 Location 692,010 -  692,073 ( + ) ;   64 (bp)
Exon 3 Location 692,522 -  692,613 ( + ) ;   92 (bp)
Exon 4 Location 692,737 -  692,843 ( + ) ;   107 (bp)
Exon 5 Location 692,932 -  693,006 ( + ) ;   75 (bp)
Exon 6 Location 693,400 -  693,474 ( + ) ;   75 (bp)
Exon 7 Location 693,700 -  693,792 ( + ) ;   93 (bp)
Exon 8 Location 694,177 -  694,656 ( + ) ;   480 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0112200 Os06t0112200-01 201586 J013056A05 1502 LOC_Os06g02220.1 AK066172 10537 AK066172.1 32976190 BAG89852.1 215694661 NC_008399.2 297606578 NM_001063127.1 115465985 NP_001056592.1 115465986


Chromosome: 6 ,  position: 691,775 - 694,656 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 accgcctctc tctcctcccc caccacgcgg cggcggcagc agcagcagct agggtttaga 
000061 gagcagcccc caatcccatg gccccgccct ccgactccga cgactcggcc ccgatccccg 
000121 ccggcgccat ctccaagctc ctcatcgtca taggtactct caatcctcat cccctcctgc 
000181 gcttctgctt cttgttgcta atcccgttgc tgttgtttgg ttggtttggc ttcagcgatg 
000241 cagacggagg cgctcccgct cgtcaacaag ttccacctcg tcgaggcgga ggaatccatg 
000301 ttagtagtgt tctcccgttt ctcccccctt gttcctcttc accaaccatt tcctatcctt 
000361 ccatgccatg ctgcacttac tgctgttggg tggttataag ttaaatccct ggaattagga 
000421 ttttttttaa aaaaaaagaa aagaaaaaag aacaagttat ttttgtggat ggtgatgttc 
000481 tgctttacta ggcaagttta gtggcaacct tcgtttaatc tgtctcatga aaatgtcaat 
000541 gtcagctgtc ctcgaaactt ttggaaataa ttatatccaa cttacaggga tagtctgata 
000601 cgatccgttt tcactattcc tgttcctgtg tccttcatac ataaattaag ctttaacctt 
000661 gtgtcatcac cctgttttgc tcatataacc tgtccgatac tctcagctct gaagctaact 
000721 cctacctttg tggcacacgc ctaacagatt tcctaaaggt gccccatgga ttagatacca 
000781 tggcaactac aaaggccttc acgttgacct tgtatggcct ggaaaagatc ctgttctcgg 
000841 taagttgtca tctataatat gctgctcacc agcttgttgt caagaatcaa gcaataattt 
000901 gataggtttc ttcatcatgt aattcttaca atttatccac aaactaacct tatttctttc 
000961 aggagttgac tgtgttggca cggtatcagc agcacttgtg acttatgctt ctattcagtc 
001021 attgaagcca gatctgatca tcaatgctgg cactgctggt gggtttaagg taatgtttca 
001081 agatatcaca tgtttgatgc catgctgtcg ttttattgta cctgggttct gatgttgttt 
001141 cccttctggt ctttcaggcc aaaggagcag acattggaga tgtctactta gcatccgatg 
001201 ttgcattcca cgataggaga atacctatcc ctgtgagtgt tctgttatgt cttgtagtat 
001261 ttttttttgt ggacctagtc ccatttttct gcagtgtgac cttattcagt tcattgatgt 
001321 gctacattat tagaattcag aaagtcatac atgtcttgaa caaaacattg ctagttttta 
001381 tctgtttatt tcataatcca gtccgtttca tggttttcta attctacctt cctgcaccgt 
001441 gacaactaat tatttataaa cttatagtct gctttactca cttgtgcttc tggtgacatc 
001501 tgctcctttg ccatttattc tcaagatatt atatttgcat cgccatattt tctacaagtt 
001561 ctttttagat aatctataca cgtttaattg agatgttgac atggaccttc ttggcttatc 
001621 cacaggtctt cgacatgtat ggaattggaa cacgaaaaac atttgctacc cctaatatat 
001681 tgaaggaact caatttgaag gtaagctaca gagctatgct agttgatgcc aaactgctgg 
001741 aatgaatact gtgtgagtcg tgcttacatg catatatctt actgtctcct ttagcatggt 
001801 gttgtttctg aaacgaattt gtggatttta ttggtaaact gtagcactgt atagactcaa 
001861 caagatgagt cgatcacatg ctagtgttca acattccgga agtcattgtg ccttatttgc 
001921 ttcaggttgg gaagctctca actggcgatt ctctagatat gtctccccat gacgagtcag 
001981 caatattgaa caatgatgct acagtcaagg atatggaggt atctatttac ttctgctcaa 
002041 gcattcagct taagaacata ggcacacaac agggaaatgg aggtcttcaa ccataggttc 
002101 ctcttggaag ttggaatgag ttcatccttt atgaacttta ggacaacttt tacacatctt 
002161 gcattttgtg ggtcgttatg gcattgaagt aggcaaatgt ctataggaat atatttttat 
002221 ccaactaatt atttgctgat ctcttcagtt tttttgttaa tgcctgagtt caagttaaat 
002281 cgactagcat gaataagata ctttgtgtgc actggtattc atacgaagtt atctgctgct 
002341 ctgctttgtt ttcagttgta atttgtaggc tcaaactggc ttcgttattc ttgtttttcc 
002401 agggagccgc ggtggcatat gttgctgaca tgttttcaac accggcaatc tttgtgaaag 
002461 ctgtgactga tattgttgat ggggagaaac caacagccga ggagtttctg cagaacctgg 
002521 ttgctgtgac agcagctctg gacaaggcag ttacagaagt ggttgatttc atcagtggga 
002581 aatgcatatc ggatctttga atgatgaagc ttagaaacct gttcatcaaa tccaagctct 
002641 gctgcttcaa tgcactatac tatactacat cactgctgta tgatttttca tggggatgcg 
002701 tatacaattt ttaggttccc ctgaggccct gatcccccgt atgtacaaaa ttcttggcaa 
002761 ttacttggat caatagcgtg gaattttgta gaatattctg caaaatgtgc agtgtaatga 
002821 aactaaataa ggtgatattc tgtcaaacta agataagtgg tgggcggtgg agttattttc 
002881 tt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ465471 bags39p14 616
more... (Total Hit Count: 8 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ637608 whec10a15 718
more... (Total Hit Count: 19 )
/rice/oryzabase