cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065941     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0662200 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 28,176,935 -  28,179,107  ( - );   2,173(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 28,176,935 -  28,177,899 ( - );   965 (bp)
Exon 2 Location 28,178,154 -  28,178,279 ( - );   126 (bp)
Exon 3 Location 28,178,363 -  28,178,438 ( - );   76 (bp)
Exon 4 Location 28,178,530 -  28,178,665 ( - );   136 (bp)
Exon 5 Location 28,178,810 -  28,179,107 ( - );   298 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os06g0662200 Os06t0662200-01 201335 J013049M10 1269 LOC_Os06g45140.1 AK065941 16177 AP008212.2 255676632 BAF20195.1 113596321 NC_008399.2 297606578 NM_001064816.1 115469363 NP_001058281.1 115469364
Os06g0662200 Os06t0662200-01 201335 J013049M10 1269 LOC_Os06g45140.2 AK065941 16177 AP008212.2 255676632 BAF20195.1 113596321 NC_008399.2 297606578 NM_001064816.1 115469363 NP_001058281.1 115469364
Os06g0662200 Os06t0662200-01 201335 J013049M10 1269 LOC_Os06g45140.3 AK065941 16177 AP008212.2 255676632 BAF20195.1 113596321 NC_008399.2 297606578 NM_001064816.1 115469363 NP_001058281.1 115469364


Chromosome: 6 ,  position: 28,176,935 - 28,179,107 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ggtcggagga aggcgatgat gaagaagtgc ccgtcggagc tgcagctgga ggcgttcatc 
000061 cgggaggagg ccggcgccgg cgaccgcaag cccggcgtgt tatctcccgg cgacggcgcg 
000121 cgtaagtccg gcctgttctc tcccggcgac ggcgagatgt ccgtgttgga tcagagtaca 
000181 ctggacggaa gcggcggcgg ccaccagctg tggtggccgg agagcgtccg tacgccgccg 
000241 cgcgccgccg ccgccttctc ggccacggcc gacgagcgga cgccggcgtc catctccggt 
000301 aggtacacat gacataattt gagttttttt gagttacaga gctattgtgc aaacagccca 
000361 ttttctatgc gtttatttgg agttatgaaa cacacccaaa tttagtcaaa ttcatcacat 
000421 gttgggttca ttttggttgc agatgacccc aaaccaacca cctcagcgaa ccacgcgcct 
000481 gaaagcgact cggactccga ttgcgattcg ctgttagaag cagagaggag tccacgcctg 
000541 cgtggcacga aatccacaga aacaaagcga ataagaaggt acatagtgat cgatcaatct 
000601 tgatttctag caaatgcaac aaatttgaac agagaacgca ttcttatgaa ctgcttgttc 
000661 gaatttcagg atggtgtcca acagggagtc cgctcgacga tccaggagga gaaagcaggc 
000721 acagttatct gaactcgaat cacaggtatt ataaacttca aagttcaaat ttccagatgc 
000781 gttgatgcaa atatcagtgt gatcttacag caatccatct atgatcaggt cgagcaactc 
000841 aaaggcgaaa actcatccct cttcaagcag ctcacagagt ccagccagca gttcaataca 
000901 gcggtcacgg acaacaggat cctcaaatcg gatgtagagg ccttaagagt caaggtaatt 
000961 agaaaccaaa ctctccttca gccaccaatt atcggcgcat ttaacttttc gccactttta 
001021 agatgaggta attaagaatt taccacccat agtctatgac aacatatggg tctttatcac 
001081 tttatgtgtc tatgacatgt gagtccaatt gcaaattgtc actcgtaaga gtggtaaata 
001141 gttaattgtt tctgatgatc ggcttccggc atctctccaa acttaccaat tcttggcttc 
001201 gatcccaggt caagatggct gaagacatgg tcgcgagggc cgcgatgtcg tgtggcctgg 
001261 gccagctcgg gctggcgcca ttgctcagct ccaggaagat gtgccaagct ttggatatgc 
001321 tcagtttacc acggaacgat gcctgtggtt tcaaaggctt gaacctgggt cgacaggttc 
001381 agaactcacc ggttcaaagc gctgcaagcc tagagagcct ggacaaccgg atatccagcg 
001441 aggtgaccag ctgctcggct gatgtgtggc cttaagacac ttcatccgtg ttcgagagag 
001501 cttgagattc taagaagcag ccggtgagaa tctgaaaagg ctagttgttc agtttcctat 
001561 ttttagttta tgtttgaatt ctctggctac taatgctcaa aatctgggag agaatctaaa 
001621 tcgtttggga cagataaaaa attatgcgag aaggtgtagc tgacagaaac cttcccaaac 
001681 aaatctccat cagaacctat atgtaaagta atacggtatc ctctgttact aggtgcatgt 
001741 gcataactga caagctgcta agtactaggt actacagtct gaggcaagta tttctggtgt 
001801 tttggtgctg aagaactatg ttttagtgcg tttgatctgc ggcaatcaag gccatctgat 
001861 cgaaatttga ttggtataaa tctgatcgaa atttgattgg tataagtata atagtttgat 
001921 tttgatcacc tctagtcgtc agcgcctttg gtgtatacgc tctgtaacat ctgttacgaa 
001981 ttgatctgtt cagtatactt caacagtcct gcattggttc agttcttggc gtagctctgg 
002041 tgcttctggt gcgcatagca tcggtgtgaa atgtgccact tttcatggca gttgtaatag 
002101 taaacgactg caaaattacg gtgtactata attcctaaac aaatatgtga caattacgat 
002161 gaaaattatc act

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AV917413 bags18n01 600 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ927743 whchan33l12 527
more... (Total Hit Count: 16 )
/rice/oryzabase