cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065812     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0651000 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 27527228 -  27529373  ( - );   2146(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27527228 -  27527572 ( - );   345 (bp)
Exon 2 Location 27527928 -  27528627 ( - );   700 (bp)
Exon 3 Location 27528902 -  27529074 ( - );   173 (bp)
Exon 4 Location 27529204 -  27529373 ( - );   170 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0651000 Os06t0651000-01 201195 J013038A03 1135 LOC_Os06g44170.1 AK065812 27569 AP008212.2 255676632 BAF20139.1 113596265 NC_008399.2 297606578 NM_001064760.1 115469251 NP_001058225.1 115469252
Os06g0651000 Os06t0651000-01 201195 J013038A03 1135 LOC_Os06g44170.2 AK065812 27569 AP008212.2 255676632 BAF20139.1 113596265 NC_008399.2 297606578 NM_001064760.1 115469251 NP_001058225.1 115469252


Chromosome: 6 ,  position: 27,527,228 - 27,529,373 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acctggcact cgggcggcgg cggcaatggc ggaagagggg aggagcggcg gcgtcgccgg 
000061 agacggcgtc cgggtgtgcg tcaccggagg cgccggcttc atcgcctcgt ggctcgtgaa 
000121 gaagctcctc gagagaggct gcatcgtcca tgccacgctg cgaagcatgg gtgcgcgtgt 
000181 tggttttgct cggtgattcg attttgtgct gcgatttgag cgaaatgggg agagatcggt 
000241 gggggattgg gaagtttaat tcgatggtgg ggttgagggt tttggttggt gggatgcagg 
000301 agatgaggag aaggccgggc tgctccggcg gctcgtcccc ggcgcggcgg agcggctgcg 
000361 gctgttcgag gccgatctct tcgacgccgc caccttcgcg ccggcgatcg ccggctgcca 
000421 gttcgtcttc ctcatcgcca cgccgtacgg gctggaggcc tccaactcca aggtgaaatt 
000481 tccatgttct gtccctattt ttatttctca tatgtagatt cattccaagt tggaatttcc 
000541 aacttccatt ggggaataat aaacttagat ttgctcattc tgaacacgcg gattgtagga 
000601 cgaattcttc tttttttcct gaaatctttc ctgagattaa ttatgttttg ttcgatcgag 
000661 aaagaaaccc gttgaattat aagctcatta gctcatctat gtcgattgga tcttgttgct 
000721 gctctgatca tatttgttgc tcccagtaca agaacacggc ggatgcggca gtggacgcgg 
000781 tgcgcgagat cctccggcaa tgcgcggaat ccaagacggt gaagcgcgtc atccacaccg 
000841 cctcgatatc caccgcctcg ccgttgatcg acgtccccgg cgccggcgtc ggcgccgccg 
000901 ggtacaggga cttcatcgac gagtcctgct ggactccgct cgacgtcgac tacccactcc 
000961 ggagcgccca cttcgacgtg atctctcctc ctctgttctt cctcctccaa tcaagaacac 
001021 gatgaagcaa aaaacagaag aaaccaaatt aaacattgtt ttgcagaagt acgtgctgtc 
001081 gaagatgatg tcggagaagg agctcctggg ctacaacgac ggcgagggcc gggcgttcga 
001141 ggtggtcacc ctgccgtgcg gcctcgtcgc cggcgacacg gtcctcggcc gcgccccgga 
001201 gacgctggag aacgccgtgt cgccggtgtc ccggaacgag ccgtccttcg cgttcctgag 
001261 gctgctgcag aggctggtcg ggtcggtgcc gctggtgcac gccgacgacg tctgcgacgc 
001321 gctcgtcttc tgcatggatc agccgtcgct cgccggccgc ttcctctgct ccgccgccta 
001381 cccgaccatc cacgacatcg tcgaacactt cgccgccaag taccctcacc tcgacgtcct 
001441 caaagagtat gccgatcttt ctttctctga tcaagaacaa atgattcaag aaagattata 
001501 ctccacctcg gattctagct ttggtggtgt tcttttcttc tggagatgaa gattaagtct 
001561 tttttacgta attgaggtgg tattaacgta tgattgattg agttttaatt attacaaact 
001621 taaacataga ttaatatgat attttagagc aactttcata tagaacgttt tcaaacgtaa 
001681 cacaccattt agcagtttaa aaaacgtgcc acgaaaatct taatattcat ctaactcttg 
001741 ttggataaaa gaacgggacc tttcttgtgc aatctgaatt ctgaaatctt ggcggcgaca 
001801 ggccggagag ggaggtggcg agggtgcagc cggcggcaga caagctgggt gagctggggt 
001861 tcaggtacaa gtacggcatg gaggagatac tcgacggcag cgtcggctgc gcggcgaggc 
001921 tgggttacat cgacgcagcc aagctcaggc cgcaggaagg atgaatctgc tacagatttg 
001981 caggatgaag aagatggatg atatttgttc ggttttgaac aagtttttgg tgtttgtttg 
002041 taatctcatg tgttctgaat acctctctca tgtatcacat gacgcatttc tgcgtcagag 
002101 aacgatatta ataagtactc cgtggagctc gctaggcact tgagtt

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
BY837186 baet117g06 457
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ635323 whdp20n08 689
more... (Total Hit Count: 4 )
/rice/oryzabase