cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065744     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0165800 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 3,313,115 -  3,314,453  ( + ) ;   1,339(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,313,115 -  3,313,314 ( + ) ;   200 (bp)
Exon 2 Location 3,313,413 -  3,313,492 ( + ) ;   80 (bp)
Exon 3 Location 3,313,591 -  3,313,735 ( + ) ;   145 (bp)
Exon 4 Location 3,313,829 -  3,314,453 ( + ) ;   625 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0165800 Os06t0165800-01 201123 J013039L12 1068 LOC_Os06g06980.1 AK065744 33143 AP008212.2 255676632 BAF18824.1 113594950 NC_008399.2 297606578 NM_001063445.1 115466621 NP_001056910.1 115466622
Os06g0165800 Os06t0165800-01 201123 J013039L12 1068 LOC_Os06g06980.2 AK065744 33143 AP008212.2 255676632 BAF18824.1 113594950 NC_008399.2 297606578 NM_001063445.1 115466621 NP_001056910.1 115466622
Os06g0165800 Os06t0165800-01 201123 J013039L12 1068 LOC_Os06g06980.3 AK065744 33143 AP008212.2 255676632 BAF18824.1 113594950 NC_008399.2 297606578 NM_001063445.1 115466621 NP_001056910.1 115466622


Chromosome: 6 ,  position: 3,313,115 - 3,314,453 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggcgaagtca atccggcgat ccccggcgag cgagagatcg aagcaagctg ctacacagat 
000061 ctcacgacat ggccgaggcg gcgtcggcgg cggcggcggc gacgacggag caggcgaatg 
000121 ggagcagcgg cggcgagcag aagacgcggc actcggaggt cggccacaag agcctcctca 
000181 agagcgacga tctctaccag gtaacccgcc gtctccggcc atcccctcct cgccggaaaa 
000241 cctccgccgc cgtggctgac cttgcctgac tggctgactc ggtgcttcgt ttccgcagta 
000301 catcctggag acgagcgtgt acccgcgcga gcacgagtgc atgaaggagc tccgcgaggt 
000361 caccgccaac cacccatggt acgccacgaa tcccctcctc ctcctcttgg gccccgaatc 
000421 ggagctcggc gacatcgatt tgattcgatt gggagggatc gatgttgttc ttgcaggaac 
000481 ctgatgacga cgtcggcgga cgaggggcaa ttcctgaacc tgctgctgaa gctcatcggc 
000541 gccaagaaga ccatggagat cggcgtctac accggctact ccctcctcgc caccgccctc 
000601 gccatccccg acgacggcac ggtcagcaac acgcaaatcc cccatctctt ccatcgcaga 
000661 tctggcaaga aatccccaat cgattgacgt ccatccctct gctaactaat gcagatcttg 
000721 gcgatggaca tcaaccggga gaactacgag ctggggctcc cgtcgatcga gaaggcggga 
000781 gtggcgcaca agatcgactt ccgggaggga cccgcgctgc cggtgctgga ccagctggtg 
000841 gaggaggagg gcaaccatgg gtcgttcgac ttcgtgttcg tcgacgccga caaggacaac 
000901 tacctcaact accacgagcg gctgatgaag ctggtcaagg tcggcggcct cgtcggctac 
000961 gacaacacgc tctggaacgg ctccgtcgtg ctccccgccg acgcccccat gcgcaagtac 
001021 atccgctact accgcgactt cgtgctcgag ctcaacaagg ccctcgccgc cgaccaccgc 
001081 gtcgagatct gccagctccc cgtcggcgac ggcatcaccc tctgccgccg cgtcaagtga 
001141 gcccgccgcc gccgcgagtg cgactccggc cgatgcccaa gaactagtca ttttaaattt 
001201 ataaattata actaaattgt ataatttttg cctttttttt ttaatttgca agctactgga 
001261 aaatgttatt taatatatgt ataaatgtcg agacaataat attattgcat tataaattga 
001321 cctggttttt gttagcttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ549094 bags28c08 509
more... (Total Hit Count: 9 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ666479 whkp7h10 813
more... (Total Hit Count: 177 )
/rice/oryzabase