cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065612     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0173100 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 3,688,677 -  3,693,343  ( + ) ;   4,667(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,688,677 -  3,688,896 ( + ) ;   220 (bp)
Exon 2 Location 3,689,057 -  3,689,175 ( + ) ;   119 (bp)
Exon 3 Location 3,689,968 -  3,690,075 ( + ) ;   108 (bp)
Exon 4 Location 3,690,643 -  3,690,834 ( + ) ;   192 (bp)
Exon 5 Location 3,691,019 -  3,691,210 ( + ) ;   192 (bp)
Exon 6 Location 3,691,493 -  3,691,611 ( + ) ;   119 (bp)
Exon 7 Location 3,691,749 -  3,691,836 ( + ) ;   88 (bp)
Exon 8 Location 3,692,164 -  3,692,283 ( + ) ;   120 (bp)
Exon 9 Location 3,692,387 -  3,692,527 ( + ) ;   141 (bp)
Exon 10 Location 3,693,074 -  3,693,343 ( + ) ;   270 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0173100 Os06t0173100-01 J013026E01 200987 J013026E01 935 LOC_Os06g07630.1 AK065612 328 AP008212.2 255676632 BAF18858.1 113594984 NC_008399.2 297606578 NM_001063479.1 115466689 NP_001056944.1 115466690


Chromosome: 6 ,  position: 3,688,677 - 3,693,343 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actagctcag tcgctcgcct ccgctgctgg tgtcgagccg cttccgatcc ccccccctcc 
000061 cgacgcgagg ccgaaaccct accgccgatg acgtcatccg gcgctccccc gccggcggcg 
000121 atggccgtgg acgacgcgga ggacgaccag ctcgcctcca tgtccacgga ggacatcgtc 
000181 cgtgcctccc gcctactcga caacgagatc cgcgtcctca aggcaagccc gcctccgctc 
000241 tctctctctc tcccctaacc ctagatcccc ctccctccga ggtttttgcc agttgcctcc 
000301 tccggtgaat ctttgcttgg attagggttt ccgggtcgtc tgatcggttt ggggtttttt 
000361 ttggtgtgat tttggtgcgc aggatgagct gcagcggacc aacttggagc tggaatcgtt 
000421 caaggagaag attaaggaga accaggagaa gattaagctc aacaagcagc ttccctacct 
000481 cgtcggcaac atcgttgagg taaaaaataa caaaaatgcc atcctagttt atcagattgg 
000541 atcttctatt gtgttgagat acttcttagt ttgatatgag atcgtggagt agtgcgtgag 
000601 agaaaagcca aatgcgtgtg ctttagtgtg ggggcaattc ggtataaatt gcttttggtc 
000661 tgattcatcc tgtttcttgt caacattgtt ctgtaattca ataatctgtc ttagctcgct 
000721 gtgttcagaa gatccacaat tccttgtaag aaaatattga tactgtgatc atttgatttt 
000781 gcttctgcta tttccattat ttgtgcctac acattatcta tctaagtgtt agcatgtatt 
000841 tgcagcagta ataactctct aaagtctaaa ttatgtgact ttgatccata ggactgtaac 
000901 aaccaacaac ttgatctggc ttggattact aacatcaaat agcatttcaa cttgattact 
000961 ggtctatgtc agtactctta gtgttcaaga tcttcaaggt ctgaataagt tcatcctgag 
001021 tagattaacg caaatttgca taagcataac atctgatggt tctgtagata ctatcaccta 
001081 tgatgcattt gagtatctgc actcctacat gacttgcaat atggtacgat tcatcataga 
001141 taaagtattt aaaactaaac cacttctatt gattcggcat gataattaag tgctattacc 
001201 agaaattgct gtttccctat taatgtgacc tattgttttg gaacaattgc gtattgtaac 
001261 catatggttt ctgcttttct caactgttta gattctggaa atgaaccctg aggatgaagc 
001321 tgaggaggat ggtgctaata ttgatttaga ctcacaaagg aaaggaaaat gtgttgttct 
001381 gaagacttcc acaagacaag taagaacaaa aacctggttt ccctattcct ttagctccta 
001441 gattttacat catatgaatg gacgacttcc tttattcatg aaatggaaaa aattgattaa 
001501 attacagcat gcctcacata tcagttattt ctatattggc aattaaaata aggtttctgt 
001561 tgtaactgaa tggtttggat tagatatgat ccataaaatg aatataactg caaagaagaa 
001621 tatgttgaag caagtgtagt tggttggaaa ttttgtaaaa gtaaacagtt ctacagaaca 
001681 atttatgcct gtcgtccagc aagcaaagtg ctctcagtta atgtctttgc tttggtacaa 
001741 tagtgtcgga ctttgttatg tgggattgtg agtcttttat tgaaacatat gtttacttcc 
001801 aaatgtccgc tggaatgtgt attactgttt taggttcata tctaaaagca atgaaatatt 
001861 ctgtaacata atatttttta ggcttaagca tgacttatag ttcaaaaaaa aaagagaaat 
001921 caaactcatt tttgtaaaat atcctttgtt cctatttcga ttgcagacta tattccttcc 
001981 tgtggttggg ctagttgacc ctgataaact caagcctggt gatttggttg gagtaaacaa 
002041 agacagctac cttatactgg acacactgcc atcagagtat gattcacgag taaaggcaat 
002101 ggaggtggat gaaaaaccca cagaggacta caatgatatt ggaggtcttg aaaagcaggt 
002161 acattgctta ataaatgttg aaagttcagt gttccttttt ggaactggaa atattgacaa 
002221 ccatctcttt agggaataat agagcaattt gtatcgcttc atgcatcaag catgttacat 
002281 ttccatccat cttttccttt tcataattta tcattctttc catcctattt tattgaatat 
002341 agattcaaga gcttgtggag gcaattgttt tgccaatgac acacaaagat cggttccaaa 
002401 agttgggcat tcgccccccc aaaggagttc ttttgtatgg accacctgga actgggaaga 
002461 cattgatggc tcgtgcatgt gctgcacaga caaatgcgac gttcctgaaa ttagctggtc 
002521 cacaattagt ccaggtaatt atttatttca attaaaaagc tccattgatt atcatctttt 
002581 ttttttcttg tgaccatgtt gatatttatt tggtgttcat ggggaggcaa tagttatgtg 
002641 gttgatcatc attgtttgtt ggtattacac agatgtcaat ttgattgtat ggttctatga 
002701 atatcattca agaatcacat atgaacagcc ttgccttcag aagtctattt atttactatt 
002761 tacttgcata tggttttcta gcgcaacaat aatcatattt ttttgggctt gcccagatgt 
002821 ttatcggtga tggagcaaag ctggttcggg atgcttttca gcttgctaag gagaaagctc 
002881 cctgcatcat tttcattgat gagattgatg ccattgggac taagaggttt gacaggtatg 
002941 tatgtctcac atgattttta tcccctggaa tttttcctac attgtttcaa attctataat 
003001 ataatcaaaa cattcttatt gaaaaaaata tattcttatt gttaacaagc attttgcttt 
003061 attctatgac agtgaggtta gtggtgacag agaagttcag aggactatgt tggaattgct 
003121 gaaccaactc gatggattta gtagtgacga gcggataaag gttaggatat attaatattt 
003181 gtttctttgt tgcatgccga catgcatgta ctgattatcc ctgccctgat ggtttagttg 
003241 agcacttgat cttttttgat ttcttgatct aatctgaaaa tggatggtgt tacatttcat 
003301 gttgaaaaga caaatccatg tttatgtttg gttcatgaac catccttgcg ctgctacgat 
003361 tttatctagc ttctgaaatt tcatttatca atatcatctt gatatcattg cttcgaatct 
003421 ctatgttttg attagcaatg ttttcttttt agtcatttca tctgtttgat ggtatattat 
003481 tggtcaggtc atagcggcaa cgaatcgtgc tgacattctt gatcctgctt tgatgcgatc 
003541 tggtcgtttg gaccgaaaga ttgagtttcc tcatccatct gaagaagcaa gagctagaat 
003601 cttgcaagta ggtttccaga acctgtgatg tctaatcagc taatgtttat tcatccattt 
003661 gcttttgtaa tccacaagtc atgctttaac taatatgtgg ttctctgtag attcactcaa 
003721 gaaaaatgaa tgtaaaccca gatgtgaatt ttgaagagct ggctcgctca acagatgact 
003781 tcaatggagc gcaactgaaa gctgtttgtg tcgaagctgg tatgcttgca ctgcggcgag 
003841 atgctacaga ggtgtgactt cctattttat tcttataatc ccataacgtt cctttgttct 
003901 tataatcccg taatgtccct aaggttttgg tttcagttct ttattgaggg ggaaaagatt 
003961 ctttccagat tcatttgttt ctagttgaca gaacttagta aagaattaat gtgactgttt 
004021 ttagatggat attatgtgaa tatttgcaaa actcgataaa aatctcaggg ttcacaagtt 
004081 aaatgccatg cacacaaata gcactgtatg tttttcccat ggacatgttc tcttgtggta 
004141 tcactcagca taggattctg ctctgacatg gtgccgcttt gcctgccaat ttgtggtttc 
004201 tgctcatagg aaatagtttt gcaaagcttt atttttgggg gttctaggca atccctctac 
004261 accattaagt ttctttggca tttcattact ggagattgtg ttaatctgct tggcattgtt 
004321 agataagcta tttgttacca actctaatta tgttgataac tacttgtggt ttcttatcct 
004381 gatcgtttct tgcgcaggtg actcatgagg acttcaacga aggcataata caggtgcagg 
004441 ctaagaagaa gtctagccta aattattacg cttaacaagc tatgctagaa tcatcagggc 
004501 tctggagttg tttgtaacca tactgtttgg ataatcgaaa atatggcttc acgtttcatt 
004561 tgaggtataa cttttttaca ctataaagtc atcacttgct tcttatgtga tggaaagttg 
004621 gaaactggaa agcttcttat gtgatggaaa ctggaaagtt tttgttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248419 FLbaf164d05 1526
more... (Total Hit Count: 17 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ778489 whatl26o11 879
more... (Total Hit Count: 174 )
/rice/oryzabase