cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK064280     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0693000 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 29,795,693 -  29,800,986  ( + ) ;   5,294(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,795,693 -  29,795,782 ( + ) ;   90 (bp)
Exon 2 Location 29,795,843 -  29,796,149 ( + ) ;   307 (bp)
Exon 3 Location 29,796,501 -  29,796,553 ( + ) ;   53 (bp)
Exon 4 Location 29,797,009 -  29,797,094 ( + ) ;   86 (bp)
Exon 5 Location 29,799,195 -  29,799,376 ( + ) ;   182 (bp)
Exon 6 Location 29,799,454 -  29,799,655 ( + ) ;   202 (bp)
Exon 7 Location 29,799,896 -  29,800,127 ( + ) ;   232 (bp)
Exon 8 Location 29,800,215 -  29,800,368 ( + ) ;   154 (bp)
Exon 9 Location 29,800,447 -  29,800,986 ( + ) ;   540 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os06g0693000 Os06t0693000-01 002105G03 107323 002105G03 12863 LOC_Os06g47780.1 AK064280 13260 AP008212.2 255676632 BAF20344.1 113596470 NC_008399.2 297606578 NM_001064965.1 115469661 NP_001058430.1 115469662


Chromosome: 6 ,  position: 29,795,693 - 29,800,986 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gaagcagctt tcccggcggg gatcggccat ggcgagcggc ctgtggggcg cgctcgggca 
000061 ggcgtcgagc gtggcgcagc tggtcggcgt ggacgcgctg gggctggtct ccatggtggt 
000121 gcaggcggcg ctggcggcgc gccgccaccg ggacgcgtgc cggcggctgg ggcagcacgt 
000181 ggacctcgtc ggcggcctgc tgcgggagct agagctcgcc gagctgatgc ggcgggaggc 
000241 caccaggcgg cccctcgagc ggctccaagg cgcgctgcgg cggtgctacg cactcgtcag 
000301 ggcgtgccag gatgactgcg gctacctcca ccgcctgctc ctcggcgctc ggatggccga 
000361 cgagctccgc gccgcgcagc acgagattga catgtacata cgcctcatcc ctctcatctc 
000421 tctagtcgac agcagcaaca ataatcgtcg tgtcacggta agcccttgtt tcatcctttt 
000481 tctagtaata agataatttg ggtggttcat cttaaaactg aagattatgg cgtatcgaga 
000541 tggaggagaa attgctgatc tctttttatg atgattcatc tgatcgaagt gatatgctca 
000601 agtgatcctt cctgtcaatg tttctgctgt gcacttgtac ctgaattggg gtacatagcc 
000661 atttcaactt ttagtcaaac aacttgacat gtactaactg ttagttctgg agtcataaga 
000721 ttttccttac ttgtgcactg ttagttccaa aagtccactt tgtgtgcaag ccaatttcat 
000781 gtgaatgata tctgcagttg tctagcaggc aaccgagggg gtgcccagtg tagtcccaag 
000841 ttattcagat catcacacaa ggttagatat tgtttcagta ccccataact gattacttaa 
000901 tgtttctttc catatcaaat ccgggagctg atgtccttat cacggttttt ggggaaaaaa 
000961 aactgtcaac attgaaggcg aactatcgcc gatattgaat attttcatgc tggaaccaga 
001021 gaatcattga ccatggccgt gtttagttca cccccaacta ccccaaactt ccaacttttc 
001081 atcacatcac atcacatcta aaactttcct acacacataa actctcaatt ttttttccaa 
001141 acttccaact ttccccaaac tttcaacttt tttcaggaac taaacacacc ccatatatgg 
001201 tctatattta tttatattca aaactcagtt gttatgacta ccattttgtt agggctgaaa 
001261 tgagaaccct cttttcatga ttctagcata taatgagtat atttgaccaa tcttaggttt 
001321 ccaagaagaa tattggcgtt cactgaaata catgttcaag gagccaccaa acctagggaa 
001381 atcaggggga aatcattaga aggtgactac ttttatgagt ttcctgcagt tgttaattat 
001441 gaattgaaaa ccacattgca ataaatgttc tcatcatcaa gaacataatc ttattgttgc 
001501 atttgtcgca gtaacagtgt actttatttt ataaatgtaa cagtgtaccg ctgatgctta 
001561 gaaaatgcgt tggaacagag aaaatcccca ctccatttta gtcatccatc gctgaaccaa 
001621 accattctgt ttttctcctt ctataattga aatggcagag ctcctgccca ttccctcgaa 
001681 aaaattttag tcatccatca tagcatcatg acttgtggcc aagtgttggc tatttggatc 
001741 acatcatagc actgcaatgt agttaaaaat gactaagcac agtttgaaca agaatagcag 
001801 ctaatgtgca acattagctt catctatcaa aaagcagaat ttcagcgaga agaagcgtaa 
001861 agatgctaaa gatatcatat atttctgagc atctttccca tcctttagga gttatcatga 
001921 ggtacgaggt actacgaggt accaatctaa tctaaccgtt gatttagtag gggtatgatc 
001981 gggctaacaa aaaaaaaaga ggaatggaga gacaccgttg catcgaggcc gtcgcgcatt 
002041 gagggggtgt ttagatggga ttaaaacttt ttagctcatg tcacatcgga tgtttggacg 
002101 ctaatttaga gtattaaaca tagactaata aaaaaactaa tttcataaat gagagctaat 
002161 ccgcgagacg attttttaaa gcctaattaa tccataatta tcaaaagttt actgtagcat 
002221 cacattgtca aaatcatggc gtaattagac tcaaaagatt cgtctcgcga attagtccaa 
002281 gattatggaa tgagttttgt aattagtata tgtttaatac tctaaattag tgtccaaaca 
002341 tccgatgtga cagggacttg gaataagtcc ctgtaaacca aacagcccct gagcctgctg 
002401 ccgtgccgcc gcgcatcgag gccgccgtgc cgccgcgcat caaggccgcc gcgcatctag 
002461 gccgctgcgc cactgcagtc gcacatcgag gctgccttgc tcggagacac ccaatttgag 
002521 tctgctgatt taatctgaac agagaaatac aggaggagga aaaataatgt cccataagtg 
002581 caactttaat ctgaatagag gaaggaatca ggaggaaaaa caatgcgtaa ctcaaagtac 
002641 accagacttg aatcgatatt atttacagca gatccaattt ctgaaccttg ttttttagtt 
002701 catcaatacg aaacttgcaa ttcaacagta agctggtaat caaccattta gccatttaca 
002761 tttggttcag caaactcaac aacaaaattc acagcaaaaa ggaggaagag agaggccgtc 
002821 gctgccgcgg ccgtcaacaa tattcacagc agaaaggagg aagagagagg ccgccgttgc 
002881 cgccgcctcc gccgccgcgc atcgagctcg ccgctgccgc cgagcatcga ggccgctgcc 
002941 gcctcgagcc cacagctgct gccatcgcgc atcaaggccg ccgcgctgct gccgtcgcgc 
003001 atcgaggccg ccgccgggaa tgtgcccgtg ccctcgccgc catctctcgc tgctcttccc 
003061 cgacgatttt tccctctcgt gaaggaagcg aaacgcgaaa gaaagagatg ccccacgcga 
003121 aagtacagaa gtacccttcc acccatgata ccgctttaat aaggaggtgc agtaccatga 
003181 gatatgaacg atttctgatc gttagatgat gccagatcaa cggttaggat ttggtactgc 
003241 acaaccccaa ggacagtaaa aaacctctac attttttaca ctaggtgaag tagataaagt 
003301 gcatgatgaa aatcatttgt tctcatcaag ttttatcttt cgcacaccat gaatatatct 
003361 tttgctcaca taagtaatat atcttttgca catcatgaag tcactaatta ttgtacaaag 
003421 aagtcgagca tttctcattt ttagttattg aacttttgtc caaattgcgt tggtgacatg 
003481 gggtcattta ccactcatcc agtaacagtg gacctgcaag aacagaaaat aatggacatg 
003541 gaggcaataa tgagactttg tatccaaact gaagagaact atccaggatt taggaagttt 
003601 ggtttctttc agcttgtgga tgctacagat ggtttttcag agaacagaaa tgtcggaatt 
003661 ggtggattcg gtactgttta caaggtgatg aatgttagat actccttgtc tacccaaaat 
003721 atgatttgtt ataatagaat gctacatgaa ttctattgca gggccagcta cttgatggac 
003781 atacagttgc tatcaaaaga tttgttgtgg atgcagcaat atttgatttc aaaagtgaat 
003841 tgcagcttgt aaggcttcag cataccaacc taattaggtt attgggatgg tgcattcatg 
003901 aaaaagaaaa gattcttgtg tatgagttca tgcagaaagg cagtttagac aatattatct 
003961 tccgtaagtt ttaaacagtc tctttttaat acgttttgcg agacgggctt aatccaattc 
004021 ctaataaatg tgcacatact aaagcagtta ttatgcttct gataacaaca catttgaaac 
004081 acctttcaca cacatgcaca cacacaaaag tctgattcca aaactatgtt gatttgataa 
004141 agaacagtat gtaagcaatt actatgttct ctaaagtaca tttcttttgc aatcattcta 
004201 cagacaaaag gaagggcgca ttgctaaatt ggtctaagcg acttcagata attaaagggc 
004261 tagctgaggg gcttctttac ctgcacaagc actgtttgat tgtacatagg gatttgaaac 
004321 caaataatat cctcttagac catgacatga acccaaagat tgctgatttt ggatctgcag 
004381 taacactggt ttcagatgta gcagaagagt gtacaaggag agtcgtggga accaggtatg 
004441 agctgaacaa aatataaaga atggtgcagt gcaacatata tgttccagtt ttctcatgcc 
004501 tacctctgct atccatttcc agtggttaca tagctccgga gtatgcatcg gaaggccgtt 
004561 attcgcttaa gacagacgtg tttagctttg gcgtcgtggt tctagaaatc attagtggac 
004621 gaaagaattt cataatggag aaacaagggg ataccgttgg caatctcatt cgagacgtga 
004681 gtatttgttt taatggtctt cttctagcaa atagtatttg tgttgggcac ctgactaact 
004741 gtaacatatt tcaggcatgg catatgtgga gagatggaag gttgcatgag cttgtagacc 
004801 cagcattgtg tgatgaatat gaaagccctg tgataatgcg atgcactcag gtggcgcttc 
004861 tttgtgctca agaagatcca acagaacggc ccacaatgac agatgttact agagttctga 
004921 actctcaaag catactatta tcagatccaa agaagccaac tgagctaact gatggaggtg 
004981 ctagtactga caggccatcg acatatattg gccagtcgag caagacgata gacataacca 
005041 tcacaagttc agctccggtg tccaccagag ttcgcatcat tgttgaccca gaaatttgat 
005101 ttgaggtgga aaaacacctg ctgtagatag agatcgtggt acaaaagagt tgttttgttg 
005161 agtcgtccat attggcgtgc cttggtgatg caatactgca agtaatgtag attgtgctcc 
005221 tgagagtgat cagagctatc cactatgtat ggtgtgtgac gctgccattc aacacaaagc 
005281 tgattatttt actc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ875267 whthls18a04 664
more... (Total Hit Count: 2 )
/rice/oryzabase