Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK059876 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os06g0220800 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 6 |
| RAP - Location, Length | 6,221,704 - 6,223,695 ( + ) ; 1,992(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 6,221,704 - 6,221,870 ( + ) ; 167 (bp) |
| Exon 2 | Location | 6,222,458 - 6,222,645 ( + ) ; 188 (bp) |
| Exon 3 | Location | 6,222,728 - 6,222,852 ( + ) ; 125 (bp) |
| Exon 4 | Location | 6,223,042 - 6,223,695 ( + ) ; 654 (bp) |
| Related Rice IDs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os06g0220800 | Os06t0220800-01 | 006207F09 | 101960 | 006207F09 | 8249 | LOC_Os06g11740.1 | AK059876 | 18740 | Q67VZ8 | APRL2_ORYSJ |
Chromosome: 6 , position: 6,221,704 - 6,223,695 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 acgcgatgcg gtggtggccg gcgctgccgc tgctcctcct cgccgtcgcc gtcgccggtg 000061 ccggcgacgc ggctcccgtg tgcacgcggc cgtccgcggc tgaggcgatc gtgggatccc 000121 ccgaggcgtg ccgctcgccg ctgcgccgcc cgctcggcgt caccgaggtg agccgtagga 000181 ctactagtga gtttggtgct gtgaaattca gttggtatcg ggtatgttag aatcgaggtt 000241 ctgttcgggg gtaggaatac gtctcaaaca tgtacaatct gcttactgat gatgtttgaa 000301 attttcatgg tcgtggattg gtctccaacc aacctgccaa agtgccaatc ccttcttatt 000361 ctattacagc gcatgattta gcagttgaac gaactagttt acaccgtgat gccatctctt 000421 ctttgtactg ttaggtaaga gtcagaggtc tgattcagta caacactttt actgaccttg 000481 ttgttacgca gtaaatacga gatcaacctg tcaagccgga taattccctt ttttttttca 000541 tcattttagt gctcgacaca tatccatcat ctgaattttc gctcatgtgt ttacattact 000601 tcgcactttt tatacaatag gaccacaaat tacaaactac cttgtgttgt tagttttcat 000661 cccattttct tgttgcagcc gagcgcttca gatatgtttt tatcctatcc gtttcacttg 000721 tcaattatat gaagctgcat ctactcattt ctagggagat gatgctatct tagcgagggc 000781 cgttaatcta cttcatgcaa acaaggagga tttcgctgct gtgctcttct atgcttcctg 000841 gtgcccattt tcacaagaat gcagactacg ctttgagaag ttggcttgca tatttccaac 000901 tattcgtcat cttgcaattg aagaatctac ggtcaggtta aggtgtgtcc tatgtcaaat 000961 gaactaaaac agtgatgcca cagattcttt gtacgaagta ttaactcagg gttggaaact 001021 gcaggacaag atatcggtat gggattcatg gatacccaac gctgtttctc ataaactcaa 001081 cagtgcgagt gcggtatcat gggcctcgaa ctgtcaaatc cttagctgcc ttctataatg 001141 atgtttcagg tgtgtaagtt tgtcattagc cgtcaactgc aatagaaaat gttcatgcca 001201 tgcttcattt cgctctgcga aataatttat tttgtagcat ctctgctagt gtgtttatga 001261 ctaagaaagt tagaatgtct tggatactct tttcctgact ctaaagctga tggtcaagtt 001321 atctttcatg tgatgaaggt attaatccat caatggatcc agccgttgga gatgataaca 001381 ttgaacctaa aagggattgt gagcaggaaa agtgcctatt ctggtcggcg cgaacaccag 001441 agaatatact tcaaccagat acttatttaa cattagcagc ttcttttgtg atccttcgac 001501 tgctctatct tttttatccg aagatcactg cctttgtgaa gcggacatgg agtaggcgta 001561 ctctcttcac ctgccttgag caaggaaaac ataaatttaa cagggtatac ccgtctaagc 001621 aagggaattt gcatgatgga gcaaggcatg ctactgcttg ggcttccaaa tcgttagcat 001681 ctgtttcaat cggagagcca agcaccagtt gattgaacaa caatacatga agaacacgat 001741 ttgtcaactg ggacatgtag tagattggag taatcagtaa ctgaacagac catttgctgt 001801 ggtcggctgc gcaaattact gtaactgctt cgttatgaag cacacctttt ttcccctttc 001861 cttacatctt ctcatagcta ctcttataat agttaccgtc catttcgttt tcttggaggt 001921 aataaagtat gtttcagaca agtgtacttt gacactgcaa aatgatcata aaatgaaaag 001981 tgattttaca tt |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | |||
|---|---|---|---|
| Acc. No. | Clone Name | Length | |
| BY873417 | rbast69a07 | 313 | view details |
