cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK059671     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0713800 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 31,139,973 -  31,143,843  ( + ) ;   3,871(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 31,139,973 -  31,140,170 ( + ) ;   198 (bp)
Exon 2 Location 31,140,252 -  31,140,384 ( + ) ;   133 (bp)
Exon 3 Location 31,141,914 -  31,142,734 ( + ) ;   821 (bp)
Exon 4 Location 31,143,278 -  31,143,843 ( + ) ;   566 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os06g0713800 Os06t0713800-01 101694 001031F08 8118 LOC_Os06g49970.2 AK059671 31419 AK059671.1 32969689 BAG87072.1 215765375 NC_008399.2 297606578 NM_001065103.1 115469937 NP_001058568.1 115469938 Q0D9J1 AMY2A_ORYSJ


Chromosome: 6 ,  position: 31,139,973 - 31,143,843 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 atcatcaaaa cacctgtaat catcttctga attcatcaat tcagagttca gagcagagtg 
000061 tccctgcttc tgtgcagagg agagagatcg agctatagag ctagcctggc tgctgccatg 
000121 gcgaccggac gacgcctctc catgatcctc ctcctcctcc ttctcggctt ggcttccggc 
000181 gacaagattc tcttccaggt acgcagccag ccacggactg aactgaagtt gtgaccgatt 
000241 tcagttcagt ttctgaacaa gctgttgcgt tctcttcagg ggttcaactg ggagtcgtgg 
000301 aggcagagcg gagggtggta caacctgctg atggggaagg tcgacgacat cgtcgccgcc 
000361 ggcgtcacgc acgtctggct gccgccgccg tcgcactccg tctccacgca aggtcggttt 
000421 ctcctgctgc tcctccttgt ctgaaactaa actctgaaca ttttggagtt ggcgaaattt 
000481 gggatcctgc aagcgtggag tggacagcac gctaactaag ctaccctgat tgcgaagtgt 
000541 ggataatgat tgtcactttg gcctttattt catttgggtt ggaatgagat gtttcactga 
000601 tttagttgag gaatttttgg ctagataata tcacactgac atgcgtaagg gtcaatcaat 
000661 cttgcaaccc cattctaatc ttatacagat gcaatacaaa ggtaagctgt cagcagttag 
000721 aaaaaaagat taatgatata taattagtgt aataatgagt actagtaatt aagctccttc 
000781 caggaaaaaa atatgttttt ttttcacttt ccgaagtaac taatatgcca ctttattatc 
000841 atgtttttat tttctaaaaa caataaaaaa aaactactac tgtacttcct gtgggtacga 
000901 aaacatatca tttctaaaca tttaaactgg atgtgcaaaa atcatgtgta aatttagcat 
000961 actttatccg ttccacttcg ggtattcaaa atacatacta actcagggtc tatttggcat 
001021 aactctagct tcagaagctc cagcttcagg tcaacctttt ccgaagctgg agctcaacca 
001081 aacgatttta gctccataga aattgatgtt gattttacaa agttgaagtt gattaggacg 
001141 tgacatacac gggagcgtat cctatgcaca cagaccctcg cgtgtacaca ccgtgtacac 
001201 caactaaaaa ttatcacaaa aaattttagg aaaattcata catgtacttt caatagtatt 
001261 acatctacgt gcaaagtcgc atcttcaaat tcattctaca tagagaataa caaaaaagat 
001321 aaaattctga caaaattgca accttaaaac tgtcagattt tttgtttttt ttttgttacg 
001381 gctaaaatat aatgaatttg acgttaagat tttaacccta ggtgtaatac aattgaaagt 
001441 atatgtatga tttttttcta gattttttgg tgacattttt tagttggtgt gcacgtgtgt 
001501 acacgtgagg gactgtgtgc ataggatatg ttgccgacat acacacatgt agtgagtatg 
001561 cataaggcat gccatattta tatcttggtc tctactttat cttacatcat taaaatgtca 
001621 atggtgaatt tcatatctct gtaaccattt accattattc atattttcat atctttctct 
001681 acaatcacta tgcctcattc tatctttttt tattgaataa atgtatgtcc aaataacaac 
001741 ttttttgtta tatattcatg tagtatcata atcagcgcct agatctacaa acttagccat 
001801 gtagtatcct tttggtcttg gtttggttat gcaccaaaat gagcgatttt ataggttcgt 
001861 gtactagatt gcatccacct gataagtttg catactgcca atgcaattta ctcgttattc 
001921 aatgtggcga tgtgcgtgaa gggtacatgc ctgggcggct gtacgacttg gatgcgtcta 
001981 ggtacggcac gtcgatggag ttgaagtcgt tgatcagcgc gctccacggc aagggcattc 
002041 aggcgatcgc tgacgtggtg atcaaccacc gctgcgccga ctacaaggac agccgcggca 
002101 tctactgcat ctttgagggc ggcacacctg acggccgcct cgactggggc ccccacatga 
002161 tctgccgcga tgatacccag ttctccgacg gcacaggcaa cctcgacacc ggcgccgact 
002221 tcgccgctgc ccccgacatt gaccacctca atggtgtcgt ccagcgggag ctcaccgact 
002281 ggctcctctg gctcaagtct gacgaggttg gcttcgatgc gtggcggctc gacttcgcaa 
002341 gggggtactc gccggaggtg gccaaggtgt acattgaggg gacaacgccg gtggggttgg 
002401 cggtggcgga gctgtgggac tcgatggcgt acggcggaga cgggaagccg gagtacaatc 
002461 aggacgcaca ccggcaggcg ttggtggact gggtggacag ggtgggtggg acggcgtcgg 
002521 cggggatggt gttcgacttc acgacgaagg ggatcatgaa cacggcggtg gagggggagc 
002581 tgtggcggct gatcgaccag caggggaagg caccgggggt gatcgggtgg tggccggcaa 
002641 aggctgtcac cttcgtcgac aaccacgaca ctggctcgac gcaacagatg tggccattcc 
002701 cctccgacaa ggtcatgcag ggctacgcct acatcctcac ccatcccggc aacccatgca 
002761 tcgtaagtac tcctactact gctacctctg tttttaaata gatgacgtcg ttgatttttt 
002821 atcacatatt tggccattgt cttatttaaa aaataatgta attataattt attttgttat 
002881 gaattgtttt atcactcaaa gtactttaag catgatttat atgttataca tttacataaa 
002941 ttaattgatt atttggttaa ttgactctcg aataacatgc actattaatt gattattgtc 
003001 atttcagttg actataaata tttttttaag aaacacactt tggtaatagc tatatttgtg 
003061 accctacaga cttcagtagt aaaacatatt tataattatt tgtaattttt tccaagtaag 
003121 gaagtagtca aagtttaata ttgaatactt catcaatttt ttgctattta ttagccgtct 
003181 aatacttttt tgcccttatt tatcagttgt ctactaaact tgcataatgc acgtgtgtac 
003241 atatatatac actcatcagt catctaaaat tgcacaataa tgtgcctgta tatatgtaca 
003301 tgtagttcta cgaccatttc ttcgattggg ggttaaagga gcagatcgcg gcgctggtgg 
003361 cggtgaggca gcggaacggc gtgacggcga cgagctcgct caagatcatg ctgcacgacg 
003421 ccgacgccta cgtcgccgag atcgacggca aggtggtgat gaagatcggc tcccgctacg 
003481 acgtctccag cctcatcccg cccggcttcc acctcgccgc ccacggcaac ggctacgccg 
003541 tctgggagaa aatcgccgcc gccgccgccg ccgccgatca tcgcacctct tccagcgcat 
003601 cgctctgatt gattagcgat atgatgcttg tgtgccacct cttatgtttt acttctgctg 
003661 tatatggaac aggctcttct acctttaaag gtacgtactt tcgtcactga tatgtgggat 
003721 cgataaacca tgggtctaac tgttagtgat aaagccatga tgactttgaa gatataggat 
003781 ttcaatccct gtatatagat aagtacatat gtaatataca tacgcatgat tagtgacata 
003841 tatatacact acattgcctt ggctgtgatc g

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV834958 bah20k14 603
more... (Total Hit Count: 11 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ244117 whf14e23 535
more... (Total Hit Count: 16 )
/rice/oryzabase