cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK243312     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0176000 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 4,559,247 -  4,562,422  ( + ) ;   3,176(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,559,247 -  4,559,345 ( + ) ;   99 (bp)
Exon 2 Location 4,559,426 -  4,559,742 ( + ) ;   317 (bp)
Exon 3 Location 4,560,061 -  4,560,156 ( + ) ;   96 (bp)
Exon 4 Location 4,560,281 -  4,560,358 ( + ) ;   78 (bp)
Exon 5 Location 4,560,443 -  4,560,619 ( + ) ;   177 (bp)
Exon 6 Location 4,561,904 -  4,561,972 ( + ) ;   69 (bp)
Exon 7 Location 4,562,086 -  4,562,422 ( + ) ;   337 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No
Os05g0176000 Os05t0176000-01 302673 J100055L06 LOC_Os05g08360.1 AK243312
Os05g0176000 Os05t0176000-01 302673 J100055L06 LOC_Os05g08360.2 AK243312


Chromosome: 5 ,  position: 4,559,247 - 4,562,422 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctaaccccct ccaaaaccct aaacctctcc ccctcacctg cggcggcggc ggcggcggcg 
000061 aagcacctcg tcggcacgac accatgaggc caccgcgagg taagcaacca cccgaaaccc 
000121 taggattcat ctcgcgctcg attccacttc cacccttaca cgatgctgtt ctgcgtcagg 
000181 caggggattc gggaggggag gaggagggag aggcgatggc ggcggccgcg gcggcggcgg 
000241 tgggagggga ttcgggaggg tcggggacag cggcgggaga ggaggccgtg gtgggagggg 
000301 aggcaggacg ccgaggggcc gtggcggcgg ccgcggtggc ggcgggaggg gtggcatgaa 
000361 gggcgggagc aaggtggtcg tggtgccgca caagcacgac ggcgtgttca tcgccaaggc 
000421 caaggaggac gcgctctgca ccaagaacat ggtccccggc gagtccgtct atggcgagaa 
000481 gcgcatctcc gtccaggtcc tttgctctta ctccctccat ttttttttgc gttctactta 
000541 tttagtgttt tgctagaact gtagtatgat tgtattgtac tgtagcaagc tgtaagatgt 
000601 tgcaatgttg attctatgca gtgtacacag attatgttca aatcgtgcta gaactgttag 
000661 gataatttag tgcgctgtag aaagctgtaa gatgttgcgc aatattgctt ctttgtagtg 
000721 tgatacaaag attgtgtaca tgacgcttgt ttctgttcat attgatctgt tttattgtac 
000781 atgactgttg tttctgcttt tctgctatgt acagaatgag gatggaacca aggttgaata 
000841 cagggtgtgg aatcccttcc gttcaaagtt ggctgctgct gtgcttggtg gtgttgacaa 
000901 catctggatt gtaagtttct tggttgaatc cacgtgtgca actttatgct taagtggttt 
000961 aaaatcactg tggtttgtta atgctgtagt ataaaaaaat gcatcaagtg ttaatgtttg 
001021 catcatgatt ttaggctcct ggtacccgtg tgctgtatct cggtggtgcc tcaggaacaa 
001081 ccgtgtctca tgtgtctgat attgttggac cggtgagatc tcatttactg ttctcattta 
001141 ttattcagtc acctaggtat gcaattttgc cattcgctaa tcaagtcatt ttgcagaccg 
001201 gtttggtcta tgctgttgag ttctcgcaca ggagtggtag ggatcttgtc aacatggcca 
001261 aaaagaggac caatgtaatt cccatcattg aagatgctag gcacccggcg aggtaccgga 
001321 tgttggttgg catggttgat gttatcttct ctgatgttgc ccagccagat caggtatacc 
001381 tttctcacaa tgatttcatg atcttgaaaa cgaccttaga taatttatta tatggttact 
001441 agttagtatt cattaagtgt gtgacaatgg ttttggtgac attctttgat tacttgcggg 
001501 ctgcaaatga tgagcttact cggattcccc ttcaggacat caaattggat gatgcagatt 
001561 cgagtttctg atgcattaaa gcccattacc acctgttttt tctttgctgt ttttgcctgc 
001621 tttttaaact gtctttgttg tcagttttct tatgtctagc tgtttatatt ccagtttatg 
001681 tttaagcaac ctccaaccca gaagttctat tcctacacac ggagtagtat tcttgtatgc 
001741 ttctgaagta cttaaattgt aacacgaaga tgcattcttt cttttgaaac acttctgtta 
001801 tatatttttt gaatctatcc tttttgaaat tggttttcaa ttgttatgag ttaaccatgg 
001861 ctatggattt cttttggaag cgtttggtgg ccttgatgtc ttttactaat ttatagaatt 
001921 atttacagca cgagtatacc tgcagttttg cttctatatg gctgtgttat gcatatgagg 
001981 actttgcatt tcagtgccag cactacttac tatgtcccta tatcccttat tatttaatat 
002041 tttgattggg cttagcatat gatgatctta ctcggattcc ccttcaggac atcaaattgg 
002101 atgatgcaaa ttcgagtttc cgatgcgctg tgcctccatt atttcattcc cttctctttg 
002161 cattttatga gtattctgta catcatattt ggattgtgct agcaatttgc catatgcttg 
002221 gttgtttata ctctctttag tatggtacaa ccttcagcga tatgtgtgct ttgttggtgg 
002281 ctaatagtca tgtttttgac tttttgcata ttaattttct tgatattgtc ttgttctttt 
002341 ttctgtaata tgtcagcttt cctggtatag ctttctctcc tattgttatt ttgttagtct 
002401 agtgctaatt agaactattc cagtacttgc cgtactacat ttcttaattc tgtggcagtg 
002461 tcggacattg atatgttttt gccttgtaac attgcttaca ataattcatg tatgtttgct 
002521 gctagagtct cggataaatt gtctgcatat aaaattccct ttatggaatc ttcttccatg 
002581 gccatgtcct ttgttgaaga tcttgaagat tctcactgat ttttgaaacc tttcctatgg 
002641 aatcctctgt cctgcaggct aggatcttag ccctcaatgc atcctacttc ctgaagaatg 
002701 gtggacattt tgtcatttca atcaaggtac ttttgtcttt tctctcccct gaatcctgaa 
002761 gataatcacc ttgattgagg ttgagattgg ggagatatta gatgtaatac taggtattgg 
002821 actgaaattg tttgaacagg cgaattgtat cgactccacc atgccagctg aggctgtgtt 
002881 tgctagtgaa gttgagaagc tgaaggcaga tcagttcaag ccctctgagc aggtgacgct 
002941 ggagcctttc gagcgtgacc atgcctgcgt cgttggtggt tacaggatgc ccaagaagca 
003001 aaagggtaca tcttaagaag aataaaactt gtggttgtga gtgactggtg ctaaaatgta 
003061 gtgctgcaca aaacttttgg tctaattgtt tttcacttgc accctggttt gtaaggctga 
003121 aatttttgga caaatgatgc taggagagaa gtaaaaagtc actcaggttt tgcact

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ463754 bags30f21 641
more... (Total Hit Count: 29 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ622307 rwhvs13b06 852
more... (Total Hit Count: 71 )
/rice/oryzabase