cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
|
General information
|
|
RAP - Accession No.
|
AK242143
Link to RAP-DB
(
IRGSP 1.0
)
|
|
RAP ID
|
Os05g0358700
(
IRGSP 1.0
)
|
|
RAP - Chromosome No.
|
5
|
|
RAP - Location, Length
|
17,080,425 -
17,091,729
( - );
11,305(bp)
|
|
Exon (Data source : RAP-DB)
|
|
Exon 1
|
Location |
17,080,425 -
17,081,153
( - );
729 (bp)
|
|
Exon 2
|
Location |
17,081,228 -
17,081,289
( - );
62 (bp)
|
|
Exon 3
|
Location |
17,081,549 -
17,081,614
( - );
66 (bp)
|
|
Exon 4
|
Location |
17,082,073 -
17,082,204
( - );
132 (bp)
|
|
Exon 5
|
Location |
17,082,392 -
17,082,493
( - );
102 (bp)
|
|
Exon 6
|
Location |
17,082,613 -
17,082,810
( - );
198 (bp)
|
|
Exon 7
|
Location |
17,082,876 -
17,083,022
( - );
147 (bp)
|
|
Exon 8
|
Location |
17,083,271 -
17,083,381
( - );
111 (bp)
|
|
Exon 9
|
Location |
17,084,128 -
17,084,661
( - );
534 (bp)
|
|
Exon 10
|
Location |
17,084,736 -
17,084,892
( - );
157 (bp)
|
|
Exon 11
|
Location |
17,084,978 -
17,085,127
( - );
150 (bp)
|
|
Exon 12
|
Location |
17,085,211 -
17,085,350
( - );
140 (bp)
|
|
Exon 13
|
Location |
17,086,135 -
17,086,251
( - );
117 (bp)
|
|
Exon 14
|
Location |
17,086,338 -
17,086,577
( - );
240 (bp)
|
|
Exon 15
|
Location |
17,087,226 -
17,087,399
( - );
174 (bp)
|
|
Exon 16
|
Location |
17,087,487 -
17,087,654
( - );
168 (bp)
|
|
Exon 17
|
Location |
17,087,790 -
17,088,195
( - );
406 (bp)
|
|
Exon 18
|
Location |
17,089,464 -
17,089,565
( - );
102 (bp)
|
|
Exon 19
|
Location |
17,091,310 -
17,091,729
( - );
420 (bp)
|
Chromosome: 5
, position: 17,080,425
- 17,091,729
bp
|
|
|
Now loading
|
|
Sequence (Data source : RAP-DB)
|
Nucleotide
Fasta Format
|
000001 ctcttcctcg catttcccgc accacgaagg aatcaaacgg aaaaaaaaaa gaaaaaaaaa
000061 actccaatta gatcggcccc cacgtatcgt cttcccgttc cattccttct cgaagcttcc
000121 atgaacgtgg agcgcctcgt ccccggcggc gccggcggcg gcggcggccg cttccggtac
000181 gagcggatgc cggctagggg cccggcggat gacggggagg gggaggagga ggaggaggag
000241 gcggcggtgc cggagcggcg gccggaggtc ctggcggcgt cggcgtcgtt ccgcctctcg
000301 gaggcggcgc gggtgttcga ggagctcccc agggcgtcga tcgtcgccgt gtcgcgcccc
000361 gacgccgggg acatcacccc gatgctgctg tcgtacacca tcgaggtgca ctacaagcag
000421 gttcgcggat cctcccctgc cttctctcct gttcggttta ttcacggttc tgagaaacat
000481 catgtgaaaa tttggtgtga tgagaggggg tgaattagtc tagaattgcg tccttttttt
000541 tttggttggc aaattccacg atcatattac atacatacac gttatagttc aatttgttgg
000601 tactaataac tacagctcat gattttagtt gctgcgcgaa atgtgccttc tgattgtgag
000661 ttgtgatctc tacgccacta cgaacttgtt tgattttaat ggcctgcaat tccccatgta
000721 gaaagggaaa gggggttaat gttccatgat tgatggtacc agtcaactac tagtaggatt
000781 tttcacaatc tcaaacgtta cagcgtgtcc atggcattgt gggagttgat attaatggtt
000841 cagtattgga taggcgtgac ttttatgcat ggatgttaag actacatcag atttactgct
000901 gatcagcctg tctcgagcag gtctgctctt aaattaatca tgtgcaaata cagtctatgt
000961 gaatagatta aacttgtgtg tggaattttt tggtgcagta tgcgcctaat cgatcattgt
001021 ttttgattgg atgatgtggt tacttgcact gtaaacggcc tattaacctg agtataatgg
001081 gatgtttgtt ctacctgtta tgcgctcatt tttatctgct cttacttggt gaggctaact
001141 gcctagagta ctcacctact cagtcagatg agtactcagc catgtagact tggttttcat
001201 acactgaagt ttatggtggt ttctggttaa gcatgttcca tgaaccgata tttgctgctt
001261 tgttgctaga tgttcatatg aaatttgtgg tgtgtaaaat tgtcatcccc atttagcatt
001321 tgcaacaacg tgcgtcctca cgtacaactt ggtagaactt ctttgtcctt ttatatttat
001381 tgtaagtact tgttttcttt tgttacaaga atttataaat ggaccacttt taacttttat
001441 tttgtgttgg atttagattt taggtcctga tgtttcctgt aattgacagg tatttttggt
001501 cctaatttct gatgatcatt atgatccatt ggaattctaa tatggttacc tacatataca
001561 gaggtactta attagacaca atcaattcaa gatcaagaaa ttgactaact tagaggatat
001621 ctcaaatata gattggagtg ccatggtgat tttgtttgtg ccaatttgta actgcaatag
001681 atcctaaact gaaatgattt ctatcatctt gacttgtaac gttgcaaatc aactatctag
001741 tattgactac tgaccaactc ggccttaaca acttggtaca tgcttaattt ctcaaaactc
001801 gaggctgtta agaaagtccg tgttcccttt cacttcacat cttattatct taaaatgtga
001861 taaggaactt tgtggaacac atgtttatga ccagtttgaa attaatggac tgcatgcact
001921 acacggcaca acctgtgtgc agatgtttta tacatgcaca cacggacaaa ggcaaacaaa
001981 aaatgttgaa cttgtgaaat gcatgagttt tatttcttaa tacttgtcat atataatttt
002041 tctacttgtg gtgcatactt gctttcctgt gatggacatt ttcttcttta cactgttcta
002101 tttatttcca ttaaatatga atgtttcata tgtgaactga gaaatgtttc actgcttcca
002161 ccagtttagg tggcgtctat ataagaaagc ttcacaagtt ctctatctac attttgcatt
002221 gaagaggcgt gaatttcttg aagaattcca tgagaagcaa gaacaggttg gttatatgac
002281 cattatgatt catgatgctt ttcagtactg gatttcaacc tgtaagttcc ttaaagcaaa
002341 ctcgttgagt tgccgtgcag ttgtgctgtt tgattggaga tataattaat ttttttactc
002401 ttaacttctg tacatctcaa aagttagtta gttttaggat tagaatgggc cgcaactatt
002461 tattttagaa ttatatgagc cattaggtca taataaaaac aactgttaac agtatggtat
002521 tagagctagg ttgaatagag acatccaatt cataatatgg tattagagct aggttgaact
002581 tctccttgtt gctagtgtgg atatggcatc attgccttat cctcttcaga tttaggtcgt
002641 ccttgttgtc atatgagact attgacgact agaggatctc acctatttgt tgcctgcgcg
002701 gtggcacacc tgctcctcaa aaacccctgg tgacaccagc aacaccaatc tattgtggtt
002761 ccctattgat gtatctccaa gagattgttc ctggcacaag taaagatctt tatgatgagg
002821 tgcagggcat gacatcttct ctcccccttg cttcaagtgt atctcatatt atatattcta
002881 tttattgttt taaggttctt gccgatccct ttttattttt tttctcgaaa acgcaggatg
002941 actgcatttc atttaaggag accccttttt attttaaaat gttaccgtaa catcttgtta
003001 ttagaattta tcatcattta acttttacaa gtattgatgc accctatgga aagtggagga
003061 ggcataaata tgtgtgaaaa taggatgggg tatagaagga agccattgca tctggtcaga
003121 tttagtttgt tagataacag ataataaaat agcttattat ttatggctca tacttcctag
003181 tccgcttagt ggatcaatat ttacatattc ctcatcagtt catcaggttt tgcaaatttt
003241 tatgtttttt aatattatgt ccaaacaaaa agaggcagtt tccacaaata taaggggttg
003301 aagggaaaga ttgggaaagc agcactccaa aatcccttat atttgtggat acaggcaggg
003361 agtaagtctt taagcacaga tttttatgtt ggagcaactc acctacttct tcctcgttac
003421 tttaacttaa atatgacacg ttttaaccat ttgatatctg gagaaatgtc attaggatgg
003481 gaagcagagt taagcgggga gtactaagtt gatttcttta ttttgtgatt caaggtcaaa
003541 gagtggctcc aaaatctggg aattggggag cacatgccag taggacatga tgaggatgaa
003601 gcagacgatg tgaatgttcc tgcacaggct gaagaaaact ccattagaca taggtaaaaa
003661 tttttataca tcaacgacgc actagtagtt gatgtatagt tatgctttat catattgcaa
003721 atgttgaatt agagcagttg agtctccata tgttatccca tgcatgcagt aagcaagaca
003781 ttgaacctgt tgtggcagaa atgttccttc aagtgctgtt ttgcctgtca ttcgaccagc
003841 tctggggcgt caacactcag tttctgatcg agcaaaagtt gccatgcaag aatatctgaa
003901 ccattttttg gggaacttgg acattgtcaa ctcaccggag gtactcatta cccaaatctt
003961 tatacatttc actctattgt ttccaattag aataaatgtt gaccaaaata tcctatctgc
004021 atctagatta gttttatcgt caagagtcag tactaaaata tctttcaaaa tacaggtttg
004081 caaatttttg gaggtatcat gtttgtcatt tttaccggaa tatgggccta agctaaagga
004141 agattatgta tctgttggac acttgccaaa aattcagaag gaccataaag aaaactgttg
004201 ttcatgtggg ttgtttagct gttgcaaaag cagctggcaa aaggtattat attttttgta
004261 gttcagtttt gtatttagct atcttataat cattgtattt aagatattga attgaacaat
004321 ttttcaatag gtttgggttg tcctgaagcc aggattctta gctttactca aagatccttt
004381 tgatccaaag cttttagatg tccttatctt tgatgcactg ccacatatgg atataagtgg
004441 agagggccaa atatctctag caaaagagat caaggaacga aacccgttgc atttcggact
004501 ccaggtacat attccatttt atgatctcat gccaagttag cacgtttgtt tgaaatgcaa
004561 tacttttatt tttggttgtt gacgatggaa acatttttat atctattgca agaatgttga
004621 gtttagccag attgtgattg tttagtttgg ccttgctgca aagtgacagc tagctagata
004681 tcagaatatt acttaaaaaa tcttagtgat ttttttgttc tgggcctaaa aaagatgcac
004741 tcagttaatt atttcatctt acagtaaata tataagtgct tctggaaagc caccacaatg
004801 cccaatagag ccttaggagt ctgcaggatt atctctttct ccttttgtcg tatggatatc
004861 ttaatgaata cataacatcc ttgttatgaa aaatgctact tttacagaat atttttgtag
004921 tgaattgcat actcataaaa aaatacataa actctaaaac aagttttgaa tgcggcgatt
004981 cttttcttat ttatgtggga actgaattat ttcttgtgga attcctgcct tccaatcaat
005041 tgatactatc ttggtagttc tgagctggtc cacctgttca tactattttg atacaagcgt
005101 taaccttata tttctgtgga gtctaaacat atttgtgctt ttttggagga aggtgtcttc
005161 tggtggccag actttaaagt tacgaacaag aagttcttct aaagtgaaag actgggttag
005221 tgcaataaat gctgctcgac aaactccaga gggctggtgt taccctcatc gttttggttc
005281 atttgctcca ccaaggggtc tcatgccaga tgggagtatg gtacagtggt ttatagacgg
005341 agaagctgca tttcaggcaa ttgcttcctc cattgagcaa gcaaaatcag aggttaactt
005401 tgtgttgctt caatagttac atatggagaa aataactcca attgtataaa tcttaagata
005461 accgaatatt tgatgcagat atttattact ggctggtggc tctgcccaga attgtttctc
005521 cgacgccctt tccaacatca tgggtcatct aggcttgatg ctctactgga agctagagct
005581 aagcagggtg tacaggtatc ataatggttt ccttttaatc aaagttgcag acctgttata
005641 tgatgtgtga ggtgcttaag ttatgtagca atgcttgcta cttcatcacg tgtcaattgc
005701 atgaattgta gatgcctgaa tcatagacat tttgtatctt ctgaaaatgg cttactttgt
005761 gaggttcaag tctgtttacc tttcaagctc aaacaaaaaa gaaaaaaaaa atccgtgaat
005821 cccatctgct gacaaactat tcaaatagac ccctgcgatc ggggcttctg gcccttctgc
005881 ctcccacaca ccgtcatcct cacttcctct tgcatacgct tacaagttat gtaattatca
005941 attccttaga gacagagatc atgcaagaag atttcacgat ccataggtcc ctggcactaa
006001 tctttctttg tgaaaataca ttagaagtta atgacttcat aataggtccc tggcactgat
006061 cattttttta aagaattgtc ttaatgcctg gttttgtcaa atttaaccaa gaacaagcta
006121 taggggtgtt tttggattca caccatgctt tggtgcttat gagttccatt gcacactttt
006181 gttgtattta ttcttattct taattttttt attgtttttg gtgcaaggca ggaatgatag
006241 gttcctgtca tggcctctgg tcattgataa aatatgaact tatcacatga cttgaaaaag
006301 caaaatgagt caaaaactag atggctcata aaaaccgaca gttactgact gtctactctg
006361 aattttggta attatgcaga tctacattct tttgtacaag gaagttgctc ttgcattgaa
006421 aatcaacagc ttgtacagta aacaaaagct acttaacatt catgagaatg taaaagttct
006481 gcgatatcct gatcatttct caagcggtgt atacttatgg tatgacgaat ccgtttttgt
006541 ctccctatgt tcaatgcaaa ctatttaatt ataacaactt aactccttat tttcacttta
006601 aggtcacacc atgagaaaat tgtgatagta gataatcaag tatgctatct tggaggtctt
006661 gatctgtgct ttggtcgcta cgataattct gcgcacaaac tttcagatgt tcctcctgtg
006721 atatggccag ggaaagacta ctataacccc aggtaactat ggtatttcgt ttatgatggt
006781 atttatgtag gattattccc aaattattct tacctgagtt ttcctgctgt acataaggga
006841 atctgagcca aattcctggg aggacacaat gaaagatgag ctggaccgaa cgaaatatcc
006901 tcgcatgcct tggcatgatg ttcagtgtgc tctctacggt ccaccttgtc gggatgttgc
006961 aaggcatttt gttcagcgct ggaattatgc aaaggtttgt cttttccatt gcatactcat
007021 catagtcttc cccttcatta ttgtaaataa aatacctttt ttttccagag gaacaaagct
007081 cccaatgagc aaggaattcc cttgctgatg cctcatcacc acatggtaat tccacattac
007141 aagggcatag gccaagaaat taatagtgag gctgatggta aacaaaatca tgacaaggat
007201 tgtgatgtta aaaaaccagt ctctgtggac tcacgggagt cttgtcagga cattccattg
007261 cttttacctc aagagcttga accaccggca ttgcccaatg gagatttaag agtgaacgat
007321 ttagacgcca accactctga tcacctacac aaaacaagct tcaatcagcc tttgctcaac
007381 cggaaggcaa agttggattc ttcccgacag gatttgccca tgagaggttt cgtagacaat
007441 ataagttccc ttgagtcatc atctattagg cattttgatt cttccaaaga agaaaagtat
007501 cacatggata agaactggtg ggagatgcaa gaaagaggag atcaagttgc ttcagtactt
007561 gatatagggc aagttggtcc aagggcaact tgtcattgtc aggtcagtat tgaagttaat
007621 tttgaattaa tttgttgatg ccaatgaatg agataatgag caagagtttc tcaaagtttt
007681 ggctatttta gttatataac tatgctacac aagttacgtg gtttgctatc tgaagattgt
007741 aattcattgg aagtttggag ttttaacagc tgcattattg gtagacagta attcattagg
007801 aaataatatg aaatcttttg ttataacaga tgcaacatga atgctatagg aaaagaggca
007861 aacatggaaa atctgaaacc agggctagta actatgtatg acgtaacatg tgatacttat
007921 ctagttcgaa actaagtcga tgatcagtat gagtctaatg actgacacaa aatgtgattc
007981 ttatcagttt agctacttag cagttctgct gcttttggtg atgttgtctt ttcatattct
008041 gggttcagat tatgttggtt atttgcatat ttaattggta tcgaaacaga aaaatagcta
008101 agatcagttt gttagtctat tcataattta ttaattcttt tgggtgtggc ataatgtttt
008161 tattgaagtt gctaaatgta aattctgtct tcatgatcac catttcttca aaagggctga
008221 catataagat gttcctgctg tatattcaga tatgcttgta tactaaatta ctaaactaac
008281 attagaaacc attataataa ttgcatcaaa taattctagt aagttaatga atttatattt
008341 tggttcaggt aattagaagt gttggtcaat ggtcagctgg aaccactcaa atcgaaggaa
008401 gcatccacaa tgcctatttt tctcttattg aaaaggcaga acattttgta tatatcgagg
008461 tccgcgtttt gcatttattt taaacatcaa aaattcaatt tctaaacaat agtagattag
008521 taggttttac tagataatga tctttaaata atgttcagta attgtcacta tcttattaca
008581 cattattctg tccagtttct ttggtataaa aaatcttttt tttttgcaca catactccat
008641 aagtatgtaa ttaatatcca tgagactgcc aaattgttaa catcctattt gcgcaccttt
008701 tttgcagaat caatttttca tatcaggcct ttcaggagat gaaacgataa aaaatcgtgt
008761 attggaagca ttatacaggc gcatacttcg ggcagagaga gaaaaaaagc gcttcaaagc
008821 catcataata atacctctgt tacctggttt tcaggtaatt ttctactgca gtgattagga
008881 atgtttttgt tcctggttac tcacataata tcgtggcagg gaggcattga tgatggcgga
008941 gctgcatctg tgagagcaat tatgcattgg caataccgga ctatctgtag aggccctaat
009001 tctatacttc agaatctata tgatgttatt ggtccaaaag cacatgatta tatctcattt
009061 tatggtctta gagcacatgg tagactatgc gaaggaggtc ccttggtcac taatcaggta
009121 aagtatgagt cttgtccatt tctggagcat gttttgtttt ctgccagggt cctggcactt
009181 tgccatttaa gagttgtgat tcaaagaatt agcatgtaaa atatttggca ttgcagattt
009241 atgtccacag taagttgatg ataattgatg accgcatcac attgattgga tcagctaaca
009301 taaatgatag aagcttgctt ggatcaagag attctgaggt atgcttttct catattcctg
009361 tgtccactat attttggtac gttgcacctt aacttgtatg gttatctgat gaggagtatt
009421 tgcttttcaa ttaactctat ttggtaaatg gcaaatcgct tacatcaagt aatgttttaa
009481 tgttggatgt cgattatctg atagtttacc cttgtcacct tgtagattgc cgtggtcatt
009541 gaagataaag aagttgttag ttccaaaatg aatggaaaac cttgggaagc tgggaagttt
009601 tctctaagcc tacgtctctc tctctgggca gagcaccttg gccttcatcg aggagaggtt
009661 tgggatatat tgcatttatg ctttgattct tccgtcggta atcttttgtt aatagacaga
009721 tgttcttagt attgcagaat ctccaatgta ctctttaacc atttttttct aggtatgcta
009781 gcgattcaca taaaatatat ggtatgggaa atgtattttt aattaaatat ttagtaatat
009841 ctttccatta gatagtataa atacatttga atctcattcc aaatggtagt gaccttgtga
009901 acatctgccc cgtgacaaaa ttccacatac atttcacaat atatttacgt cttactgtac
009961 taatgtctta tgtaagccgc tataaacttt tgacatgtga taaacaattt gatattatca
010021 cgatatgctt gatgaagctt tcttatattc attgcagcag atagggatat catgtgcatt
010081 attttgattg tttaaaatat aaatgtgata tacaggtcag ccatattatg gaccctatcg
010141 atgactcaac tttcaaaaat atctggatgg ccactgctaa ggtgagagaa aacataaacg
010201 ttttttcctg ccatagtcaa tttaacccta gccacttgta tcactcaaaa ctgctaatgc
010261 tactcttcct agaatgtaga aatcgatttg ggatgtctaa cctggtactt catataatgt
010321 taggatgttg ctttcttcag ttgtaaaatc ctaaactgca tggtgcatat tatatcaaat
010381 gctttagtca tggcaatctc cactaatact cataaattag ttaactgttt tttttggcag
010441 acaaatacca tgatttacca agatgtcttc tcatgtgtac ctaatgatct tatccattca
010501 aggtatgaat tgaccattcg atttcagttg ctctttttac aaattgctct agactctaaa
010561 cataatgagc atgcagggcc caatttcggc agagctttgc tcactgcagg gataaaatcg
010621 gtcacaatac aatcgatttg ggggttgccc aagagaagct ggaaacctac caggacggcg
010681 atctcaaggg tacggaccct atagaaagat tgcagatgat caaaggtcac cttgtttctt
010741 tcccgttgga tttcatgtcc caagaggact tgagaccata tttcagtgaa agtgaatatt
010801 atacgtctcc acaagttttc cattagcttc tttttcatgg aaaaattact cccctactgc
010861 catagttgta catagtgcag aggtcaacct ttaggtgttt cacatatttt gtcaaatagg
010921 gaaaagaaag aaattatcaa cccacagacc ggtggaaagg ttacaagtac agtttagtca
010981 ccggtacgtt ccttctcttt ttgggcaaga gaacactctg ctcagttcat tctgttcgac
011041 acaaagaata taggagtgta gatagtttat acggcacctt ttttcccctt ttttaggcaa
011101 gaattactcc tgttgagtta actctttgtt gacataaaga aaagctttcc cccccttcca
011161 agctgtgtct cagacttcca gtacgtgcac attttagtct acaactaaac aatggcattc
011221 gatccataca ttttggttga aaccaatgac aatccatgta atcatgtact ggtatcgcct
011281 ctggaaatgt tcagtgtttt cctgc
|
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
Update info.
