cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121717     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0557600 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 27,849,901 -  27,854,324  ( - );   4,424(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,849,901 -  27,850,550 ( - );   650 (bp)
Exon 2 Location 27,851,136 -  27,851,447 ( - );   312 (bp)
Exon 3 Location 27,851,533 -  27,851,672 ( - );   140 (bp)
Exon 4 Location 27,851,832 -  27,851,895 ( - );   64 (bp)
Exon 5 Location 27,851,967 -  27,852,413 ( - );   447 (bp)
Exon 6 Location 27,852,499 -  27,852,633 ( - );   135 (bp)
Exon 7 Location 27,853,950 -  27,854,067 ( - );   118 (bp)
Exon 8 Location 27,854,187 -  27,854,324 ( - );   138 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0557600 Os05t0557600-01 J033079L01 216436 J033079L01 21257 LOC_Os05g48380.1 AK121717 40907 AP008211.2 255675924 BAF18204.1 113579841 NC_008398.2 297605017 NM_001062825.1 115465380 NP_001056290.1 115465381


Chromosome: 5 ,  position: 27,849,901 - 27,854,324 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acccaaaccc tccctttcct cccccaattc tccatttctc ctagctcgcc ggaaacccta 
000061 agcgggccac ctcgcgccgc ggcgggccgg cgagcgatcg cattgggcgg cggcggcgat 
000121 ggcgacccac gcccccaagt gagtcccccc tccctccgcc gatctgatcg gccgcgcgcg 
000181 ccgctctttg ttccattgga atttttgttt ttgtttgtga cgtggtcgtg gttggttgct 
000241 gctctgggtg ggggcagggg ctacctctgc gcggggagct cgtcgttcga tgatcccgac 
000301 gtggtcgagg tgacgccggc ggcggccgcg gcaggggggt ggagctccgg ccaccagaag 
000361 cggaagcgga gtcaggtgat gtgggaaggc gcctcctcta tctcaccttt gtttgtggtg 
000421 catgatttta ttattttttt tggtgatgtt ggaattggga accgtagggg ggactggggc 
000481 gcgtgattgc tcgatgtggg aaggagggtt ggtgatcgtt ttaatggttg cgtgttgatt 
000541 ccagttatgc catgacctgt tattttggtg tggaattgca ctagaattgt gtgggcagat 
000601 gatctttgat tgtgccagga aatggttgag atggactggc agtggcagtt tgatatattg 
000661 aattttgatc ttagatgcgc tcaatgttga atatcaagtg gagtttgtgt tttttttgta 
000721 tggtgagaag ttgggctgtt tttgttagat gattgctgaa ttatagttta tgattgcagt 
000781 actgaaattt ttagagggtt tgattgcatt gaaatgcctg ataaaccaag caggagagaa 
000841 gcaatctaga ctgtctagac tttagagtga caccatgttt cagcctggtt catgatggac 
000901 tagaattcat gttgaaggaa atctagcatg ggacatcttt ggttgggctt ttgagtggta 
000961 gtctagcatt ctctggcact gcttgagtaa aaatccttgt ttgtttctta tctggagagt 
001021 taggcatgta aatgtgatgt tggcatgtgc aatattttca gttccagagt ggatgggcag 
001081 actgaaagtg catgccattt gattattctg tctgtctgtt aggtcaattg ttcaattatt 
001141 tgacatcttt acctactacc caatattctg gtttagacat aatctgacat atgacgttgg 
001201 tagtagagac tggaagctgt aagtacatgt catctgatta ttccagctta gtctattggg 
001261 ttgtttggtt ctttgatgtc tttctataac tctaggatta tgttttaaca atcatctaaa 
001321 acttgtggtt aatctagaga tgcctcaagt gaaatttgtt tgtttaaagg tgtcactggg 
001381 ccttcttttt ctttctgtaa catatgatat tttgtgacca aaagcccatc tccatcaacc 
001441 atcattgttg gaaatcaaga tagagttcag actccaaaga acataaagag gccaaatata 
001501 aagatgaata attagtagta accatgtcag tttttattct atgaactcag cattgccgtg 
001561 acgtttctgg ctttttcagc caccacgatt tcctgtatag gatcaattat ttcccttcaa 
001621 aacatttttg taatatcatg ttatgaaatg ttaaatggtg gggcttgagt ttttttttat 
001681 acgctgaata ggttgttcct catgaagtaa ttgaactgga tgctgatgat gatcctgatg 
001741 gagttgtgat tattggtgaa aaatcatcag ttgataagaa taagcaagct gttggatatc 
001801 ctatagactg gctaaagcat gcaaaggtaa gttttctcat gtcttctatt ttcattttcc 
001861 tttttcctat accacgtcag tttgacttat tttctgtggg aacaactcca gagtagtttg 
001921 gctggtgaaa ttgctggccc aagttcctac ccatcaaaaa atcctgatat attacttggt 
001981 ggcctgaaaa tatttcaaga gaacccattt tacaacaaca ttgatgacta tgcttatgag 
002041 gcatttgaag aagattatgg ttatgatgaa gatgagtatg atgattacga ttatgatagt 
002101 acactttatg aaagtgaata taacttcact ttggcttcca agtttgatgg tttggatatc 
002161 ccacctggtg tggaggctcc tttaccatgg ttgcagacga ctgcggcaga gatggcaaat 
002221 aagaccaaac ctgtgaacat gatggatgat aaaattgatg aaaaatacag tgcatttaag 
002281 caattcgata ctgttgatga tcacagtgat cattattatt cgaagccaga tttaagaaag 
002341 gttcaggtag tgaaaaaggt aacctttttt ttgtaccctc tgtatattcc ttttcttgtt 
002401 agttcgatac taagttttcc cattgacagc cttcaaaaga atgggcaaag cgtattcagc 
002461 acgagtggaa agttctagaa aaagatttac caggtagttt tgttgcttca tatgctcttt 
002521 tttttatgaa cagctaatgg tacagtgttt atgctaagtg tcgtgcatga tgcgatcatg 
002581 ctgttgataa gtactacatt catgaggtcc ttttatgatt atttactttg gatttttgtc 
002641 ctatatttac agataccata ttcgtgaggg catatgagga tagaatggac ctgcttagag 
002701 ctgttattac gggaccagca ggcactccct atcatgatgg tctcttcttc tttgacattt 
002761 acttccctcc tcattatccg agtgtacctc cagtaagatt ttttttttga cttaaccagc 
002821 atcgatgatg tttcactcca tttttaagta tcttacaata gttagtaatc tatgcagctg 
002881 gtgaactatc ggtctggtgg gttgcggctt aatccaaact tgtatgcttg cgggaaggtg 
002941 tgccttagcc tgttgaacac ctggtctggt agtggatgtg agaggtggag tccttcaaac 
003001 tcaacaatgc tacaagtcct ggtctcagtt caggctttgg tgttgaatgc caaaccttat 
003061 ttcaatgagc ctggatatgc catgcatgct aatacacctc atggcgagaa gagttcatta 
003121 acttataatg aagatacttt cctgctatcc tgcaggacaa tgctatattc tctgcgaaat 
003181 ccaccaaagg tatggatatg actctgttct tatcctagta catggagatg attacttatt 
003241 ttcataatag tactaaagtt gtttgatgaa tatctagaca tctactgtaa aatctctctt 
003301 gtttgatgaa tatttcatcc attaaaggtc tctttgcaat ctcctctcga aatatacata 
003361 tttattgatg tttctcattt tcgcactcgt atgttccttt cgtcaatatt aattagtaat 
003421 aatttacaca gttacactaa ctattctcaa ttattttgaa gacattaaca ttgcgatcat 
003481 ctttaccatt ccttctacta gtctttgtta ttattatagc atccataatt accatgccta 
003541 accaaaatat gtcacaaaag gaaatggagt gattactatg ggaagctatt gttgtgctta 
003601 tgtggttgca tgccatggat tccccactat gaatagatat acctgtacat cttcttaaca 
003661 atttatcttt ttgttgtggt tcttttacag tggaaatatg tgttgtttag tttctgttat 
003721 tttggatcca atcttcacat ctgcaaattt aatactaatg catttttttt gcagcatttt 
003781 gaggatttta tcgccggtca tttccgcaag tatggccaga gcatcctgat agcttgcaga 
003841 gcctatctgg acggtgccca agttggatgt cttgttggaa atggtgtgca ggatgtcgat 
003901 gagggcgaca agagctgctc ggcgaggttt aagagcgcgc tgaagagatt atttgaggaa 
003961 cttctgatgg aattcactgt caagggagca gagtgtgaca aattcctagc tgagaaggcc 
004021 aaagccgcgg cttctagagc tccagcagac accacattga ggctataagt tgatagcctc 
004081 gcgtggtcga tagacgggag taataatttc gctattgaaa taggatcctc aactcattat 
004141 gcccccggat tctaaccgtt tcctggaagt agcctatgta aatagccttg tagttgcccc 
004201 ggtaaacata aacgacatat ccgtgtttgt atttaggggc tatatatctt ttttccccat 
004261 agcatgaggg tgtcgtctac ctgcggagcc ttaatccgct gtgtatgtga ttgacgccac 
004321 accatcttgg ccttctgaag aatatcatat tgaactctta tcagcagatc cctgcttcta 
004381 cgctggaatt cagctagaat gctagattat cagttggttt gtgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ716548 whvd12l22 777
more... (Total Hit Count: 15 )
/rice/oryzabase