cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120912     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0148900 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 2,796,439 -  2,797,550  ( + ) ;   1,112(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2,796,439 -  2,796,643 ( + ) ;   205 (bp)
Exon 2 Location 2,796,861 -  2,796,909 ( + ) ;   49 (bp)
Exon 3 Location 2,797,105 -  2,797,550 ( + ) ;   446 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0148900 Os05t0148900-01 J023034E09 215631 J023034E09 20862 LOC_Os05g05620.1 AK120912 41984 AP008211.2 255675924 BAF16566.1 113578203 NC_008398.2 297605017 NM_001061187.1 115462104 NP_001054652.1 115462105


Chromosome: 5 ,  position: 2,796,439 - 2,797,550 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcaagcttt ctcaagagag atagagacag agacagagtt tagagagaga catcggagat 
000061 ggtcgcgaag gtgtacggag tggcggcgtc gccgtacgtg gcgacggtgc tggtgtgcct 
000121 ggaggaggcc ggcgccagct acgagctcgt cgccgtcgac atggccgccg gcgagaacag 
000181 gtcccgccac cacctcgccc ggagcgtacg cccctctttg ccctctccaa ctctaagatt 
000241 cgcttcactt tcatacatga tgcatctcga tctcttcttg cacaaaatca attaattgct 
000301 cgctagaaac cttttcatct ctgaattaat taaccaatca atcaaatcaa attcggctat 
000361 atcgttcaaa aaaaaatcaa attcggctat atttcgttca aatttgcacg tgtttctcgc 
000421 agccctttgg caagatccct gcctttgagg acggagaagt cactctcttt ggtatgagga 
000481 acaccacacc tcacccgaat tactgtgata tgctccatct caattactta tatattggaa 
000541 atgaataatg agtattcact ttttttgaaa ggaatattca catattatta ttattattat 
000601 tattattatt attattatta ttattattat tattattatt attattatta ttattattat 
000661 taccagagtc gcgtgcaatt caacgctacg tgcttcgcaa ttacaacaaa ccggatctct 
000721 taagagaagg caaccttgag gagtcggcaa tggtggacat gtggatggag gtggaggcgc 
000781 accactacga ccctgccatc ttccacatta tccgggagtg cgtcatcaag ccgatgatcg 
000841 gcggcggcgc ccgtgaccag gccatcgtcg acgagaacgt cgagaagctg aggaaggtgc 
000901 tggaggtgta cgagcggagg ttgtcggagt cggagtacct cgccggagat ttcgtcagcg 
000961 tcgccgacct gaaccacttc ccctacacct actacctcat gaccaccgag tacgccacgc 
001021 tggtggagtc gtgcacgaac gtcaaagctg ttgagattat gggcatataa ggatttaatt 
001081 tattccataa ataaatcatg acattacaga tg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ687462 whrd10e22 661
more... (Total Hit Count: 37 )
/rice/oryzabase